Review Article

From Genetics to Genomics of Epilepsy

Table 7

Other inherited errors of metabolism with epilepsy.

Gene symbolDefective enzyme nameDisease

(a) Congenital Disorder of Glycosylation (CDG) (23 genes)

ALG1N-linked glycosylation 1, beta-1,4-mannosyltransferase homologCDG
ALG2N-linked glycosylation 2, alpha-1,3-mannosyltransferase homologCDG
ALG3N-linked glycosylation 3, alpha-1,3-mannosyltransferase homologCDG
ALG6N-linked glycosylation 6, alpha-1,3-glucosyltransferase homologCDG
ALG8N-linked glycosylation 8, alpha-1,3-glucosyltransferase homologCDG
ALG9N-linked glycosylation 9, alpha-1,3-glucosyltransferase homologCDG
ALG12N-linked glycosylation 12, alpha-1,3-glucosyltransferase homologCDG
B4GALT1UDP-Gal: betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 1CDG
COG1Component of oligomeric golgi complex 1CDG
COG7Component of oligomeric golgi complex 7CDG
COG8Component of oligomeric golgi complex 8CDG
DOLKDolichol kinaseCDG
DPAGT1Dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetyl
glucosamine phosphotransferase 1 (GlcNAc-1-P transferase)
CDG
DPM1Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunitCDG
DPM3Dolichyl-phosphate mannosyltransferase polypeptide 3CDG
MOGSMannosyl-oligosaccharide glucosidaseCDG
MGAT2Mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferaseCDG
MPDU1Mannose-P-dolichol utilization defect 1CDG
MPIMannose phosphate isomeraseCDG
PMM2Phosphomannomutase 2CDG
RFT1Requiring fifty three 1 homologCDG
SLC35A1Solute carrier family 35 (CMP-sialic acid transporter), member A1CDG
SLC35C1Solute carrier family 35, member C1CDG

(b) Neuronal ceroid lipofuscinosis (NCL) (8 genes)

CLN3Ceroid-lipofuscinosis, neuronal 3NLC
CLN5Ceroid-lipofuscinosis, neuronal 5NLC
CLN6Ceroid-lipofuscinosis, neuronal 6NLC
CLN8Ceroid-lipofuscinosis, neuronal 8NLC
CTSDCathepsin DNLC
MFSD8Major facilitator superfamily domain containing 8NLC
PPT1Palmitoyl-protein thioesterase 1NLC
TPP1Tripeptidyl peptidase INLC

(c) Defects of mitochondrial metabolism including coenzyme Q deficiency (35 genes)

APTXAprataxinCoenzyme Q10 Deficiency
ATPAF2ATP synthase mitochondrial F1 complex assembly factor 2ATPase deficiency
BCS1LBCS1-likeLeigh syndrome
C12ORF65Chromosome 12 open reading frame 65Leigh syndrome
C8ORF38Chromosome 8 open reading frame 38Leigh syndrome
CABC1Chaperone activity of bc1 complex-like, mitochondriaCoenzyme Q10 deficiency
COQ2Coenzyme Q2 homolog, prenyltransferase (yeast)Coenzyme Q10 deficiency
COQ9Coenzyme Q9 homolog (S. cerevisiae)Coenzyme Q10 deficiency
COX10COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)Leigh syndromeCOX10
COX15COX15 homolog, cytochrome c oxidase assembly protein (yeast)Leigh syndrome
DLDDihydrolipoamide dehydrogenaseLeigh syndrome
GCSHGlycine cleavage system protein H (aminomethyl carrier)Glycine encephalopathy
GCSTAminomethyltransferase (glycine cleavage system protein T)Glycine encephalopathy
GLDCGlycine dehydrogenase (decarboxylating)Glycine encephalopathy
HSD17B10Hydroxysteroid (17-beta) dehydrogenase 10HSD17B10 deficiency
LRPPRCLeucine-rich PPR-motif containingLeigh syndrome
NDUFA2NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2,8 kDaLeigh syndrome
NDUFS1NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75 kDaLeigh syndrome
NDUFS3NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30 kDaLeigh syndrome
NDUFS4NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18 kDaLeigh syndrome
NDUFS7NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20 kDaLeigh syndrome
NDUFS8NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23 kDaLeigh syndrome
NDUFV1NADH dehydrogenase (ubiquinone) flavoprotein 1, 51 kDaLeigh syndrome
PCPyruvate carboxylaseLeigh syndrome
PDHA1Pyruvate dehydrogenase (lipoamide) alpha 1Leigh syndrome
PDSS1Prenyl (decaprenyl) diphosphate synthase, subunit 1Coenzyme Q10 deficiency
PDSS2Prenyl (decaprenyl) diphosphate synthase, subunit 2Coenzyme Q10 deficiency]
POLGPolymerase (DNA directed), gammaMitochondrial DNA depletion Syndrome
RARS2Arginyl-tRNA synthetase 2, mitochondrialPontocerebellar hypoplasia
SCO2SCO cytochrome oxidase deficient homolog 2 (yeast)Leigh syndrome
SDHASuccinate dehydrogenase complex, subunit A, flavoprotein (Fp)Leigh syndrome
SURF1Surfeit 1Leigh syndrome
TACO1Translational activator of mitochondrially encoded cytochrome c oxidase ILeigh syndrome
TMEM70Transmembrane protein 70Encephalocardiomyopathy
VDAC1voltage-dependent anion channel 1VDAC deficiency

(d) Mucopolysaccharidosis (MPS) and mucolipidosis (MLP) (15 genes)

ARSBArylsulfatase BMPS 6 (Maroteaux-Lamy syndrome)
GALNSGalactosamine (N-acetyl)-6-sulfate sulfataseMPS 4A (Morquio syndrome)
GLB1Galactosidase, beta 1GM1-gangliosidosis
GNPTABN-acetylglucosamine-1-phosphate transferase, alpha and beta subunitsMucolipidosi 2 (I cell disease) and 3A
GNPTGN-acetylglucosamine-1-phosphate transferase, gamma subunitMucolipidosi 3C
GNSGlucosamine (N-acetyl)-6-sulfataseMPS 3D (Sanfilippo D syndrome)
GUSBGlucuronidase, betaMPS 7 (Sly syndrome)
HGSNATHeparan-alpha-glucosaminide N-acetyltransferaseMPS 3C (Sanfilippo C syndrome)
HYAL1Hyaluronoglucosaminidase 1MPS 9
IDSIduronate 2-sulfataseMPS 2 (Hunter syndrome)
IDUAIduronidase, alpha-L-MPS 1H (Hurler syndrome)
MCOLN1Nucolipin 1Mucolipidosi 4
NAGLUN-acetylglucosaminidase, alphaMPS 3B (Sanfilippo B syndrome)
SGSHN-sulfoglucosamine sulfohydrolaseMPS 3A (Sanfilippo A syndrome)
SUMF1Sulfatase modifying factor 1Multiple sulfatase deficiency

(e) Peroxisome biogenesis disorders (PBD) (9 genes): Zellweger syndrome (ZWS): neonatal adrenoleukodystrophy (NALD): infantile refsum disease (IRD): rhizomelic chondrodysplasia punctata type 1 (RCDP1)

PEX1Peroxisomal biogenesis factor 1ZWS-NADL-IRD
PEX2Peroxisomal biogenesis factor 2ZWS-IRD
PEX3Peroxisomal biogenesis factor 3ZWS
PEX5Peroxisomal biogenesis factor 5ZWS-NADL
PEX6Peroxisomal biogenesis factor 6ZWS
PEX7Peroxisomal biogenesis factor 7RCDP1
PEX12Peroxisomal biogenesis factor 12ZWS
PEX14Peroxisomal biogenesis factor 14ZWS
PEX26Peroxisomal biogenesis factor 26ZWS-NADL-IRD