- About this Journal ·
- Abstracting and Indexing ·
- Advance Access ·
- Aims and Scope ·
- Annual Issues ·
- Article Processing Charges ·
- Articles in Press ·
- Author Guidelines ·
- Bibliographic Information ·
- Citations to this Journal ·
- Contact Information ·
- Editorial Board ·
- Editorial Workflow ·
- Free eTOC Alerts ·
- Publication Ethics ·
- Reviewers Acknowledgment ·
- Submit a Manuscript ·
- Subscription Information ·
- Table of Contents
Oxidative Medicine and Cellular Longevity
Volume 2012 (2012), Article ID 601836, 8 pages
Yeast Colonies: A Model for Studies of Aging, Environmental Adaptation, and Longevity
1Institute of Microbiology of the ASCR, v.v.i., 142 20 Prague 4, Czech Republic
2Department of Genetics and Microbiology, Faculty of Science, Charles University in Prague, 128 44 Prague 2, Czech Republic
Received 1 June 2012; Accepted 9 July 2012
Academic Editor: Heinz D. Osiewacz
Copyright © 2012 Libuše Váchová et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
- M. Kaeberlein, “Lessons on longevity from budding yeast,” Nature, vol. 464, no. 7288, pp. 513–519, 2010.
- P. Fabrizio, L. L. Liou, V. N. Moy et al., “SOD2 functions downstream of Sch9 to extend longevity in yeast,” Genetics, vol. 163, no. 1, pp. 35–46, 2003.
- P. Fabrizio, F. Pozza, S. D. Pletcher, C. M. Gendron, and V. D. Longo, “Regulation of longevity and stress resistance by Sch9 in yeast,” Science, vol. 292, no. 5515, pp. 288–290, 2001.
- R. W. Powers III, M. Kaeberlein, S. D. Caldwell, B. K. Kennedy, and S. Fields, “Extension of chronological life span in yeast by decreased TOR pathway signaling,” Genes and Development, vol. 20, no. 2, pp. 174–184, 2006.
- M. Wei, P. Fabrizio, F. Madia et al., “Tor1/Sch9-regulated carbon source substitution is as effective as calorie restriction in life span extension,” PLoS Genetics, vol. 5, no. 5, Article ID e1000467, 2009.
- C. R. Burtner, C. J. Murakami, B. K. Kennedy, and M. Kaeberlein, “A molecular mechanism of chronological aging in yeast,” Cell Cycle, vol. 8, no. 8, pp. 1256–1270, 2009.
- M. A. McCormick, S. Y. Tsai, and B. K. Kennedy, “TOR and ageing: a complex pathway for a complex process,” Philosophical Transactions of the Royal Society B, vol. 366, no. 1561, pp. 17–27, 2011.
- O. V. Leontieva and M. V. Blagosklonny, “Yeast-like chronological senescence in mammalian cells: phenomenon, mechanism and pharmacological suppression,” Aging, vol. 3, no. 11, pp. 1078–1091, 2011.
- M. Matecic, D. L. Smith, X. Pan et al., “A microarray-based genetic screen for yeast chronological aging factors,” PLoS Genetics, vol. 6, no. 4, Article ID e1000921, 2010.
- M. Cap, L. Stepanek, K. Harant, L. Vachova, and Z. Palkova, “Cell differentiation within a yeast colony: metabolic and regulatory parallels with a tumor-affected organism,” Molecular Cell, vol. 46, no. 4, pp. 436–448, 2012.
- M. M. Klosinska, C. A. Crutchfield, P. H. Bradley, J. D. Rabinowitz, and J. R. Broach, “Yeast cells can access distinct quiescent states,” Genes and Development, vol. 25, no. 4, pp. 336–349, 2011.
- J. Wu, N. Zhang, A. Hayes, K. Panoutsopoulo, and S. G. Oliver, “Global analysis of nutrient control of gene expression in Saccharomyces cerevisiae during growth and starvation,” Proceedings of the National Academy of Sciences of the United States of America, vol. 101, no. 9, pp. 3148–3153, 2004.
- L. G. Boender, M. J. Almering, M. Dijk et al., “Extreme calorie restriction and energy source starvation in Saccharomyces cerevisiae represent distinct physiological states,” Biochimica et Biophysica Acta, vol. 1813, no. 12, pp. 2133–2144, 2011.
- L. G. Boender, A. J. van Maris, E. A. de Hulster et al., “Cellular responses of Saccharomyces cerevisiae at near-zero growth rates: transcriptome analysis of anaerobic retentostat cultures,” FEMS Yeast Research, vol. 11, no. 8, pp. 603–620, 2011.
- D. Laporte, A. Lebaudy, A. Sahin et al., “Metabolic status rather than cell cycle signals control quiescence entry and exit,” The Journal of Cell Biology, vol. 192, no. 6, pp. 949–957, 2011.
- L. Vachova, V. Stovicek, O. Hlavacek et al., “Flo11p, drug efflux pumps, and the extracellular matrix cooperate to form biofilm yeast colonies,” The Journal of Cell Biology, vol. 194, no. 5, pp. 679–687, 2011.
- J. R. Meunier and M. Choder, “Saccharomyces cerevisiae colony growth and ageing: biphasic growth accompanied by changes in gene expression,” Yeast, vol. 15, no. 12, pp. 1159–1169, 1999.
- L. Váchová and Z. Palková, “Physiological regulation of yeast cell death in multicellular colonies is triggered by ammonia,” The Journal of Cell Biology, vol. 169, no. 5, pp. 711–717, 2005.
- Z. Palkova, L. Vachova, D. Gaskova, and H. Kucerova, “Synchronous plasma membrane electrochemical potential oscillations during yeast colony development and aging,” Molecular Membrane Biology, vol. 26, no. 4, pp. 228–235, 2009.
- P. Fabrizio, L. Battistella, R. Vardavas et al., “Superoxide is a mediator of an altruistic aging program in Saccharomyces cerevisiae,” The Journal of Cell Biology, vol. 166, no. 7, pp. 1055–1067, 2004.
- P. Fabrizio, S. Hoon, M. Shamalnasab et al., “Genome-wide screen in Saccharomyces cerevisiae identifies vacuolar protein sorting, autophagy, biosynthetic, and tRNA methylation genes involved in life span regulation,” PLoS Genetics, vol. 6, no. 7, Article ID e1001024, 2010.
- L. Li, Y. Lu, L. X. Qin, Z. Bar-Joseph, M. Werner-Washburne, and L. L. Breeden, “Budding yeast SSD1-V regulates transcript levels of many longevity genes and extends chronological life span in purified quiescent cells,” Molecular Biology of the Cell, vol. 20, no. 17, pp. 3851–3864, 2009.
- M. MacLean, N. Harris, and P. W. Piper, “Chronological lifespan of stationary phase yeast cells; a model for investigating the factors that might influence the ageing of postmitotic tissues in higher organisms,” Yeast, vol. 18, no. 6, pp. 499–509, 2001.
- P. W. Piper, N. L. Harris, and M. MacLean, “Preadaptation to efficient respiratory maintenance is essential both for maximal longevity and the retention of replicative potential in chronologically ageing yeast,” Mechanisms of Ageing and Development, vol. 127, no. 9, pp. 733–740, 2006.
- J. D. Oliver, “The viable but nonculturable state in bacteria,” Journal of Microbiology, vol. 43, no. 1, pp. 93–100, 2005.
- Z. Palková, F. Devaux, M. Řičicová, L. Mináriková, S. Le Crom, and C. Jacq, “Ammonia pulses and metabolic oscillations guide yeast colony development,” Molecular Biology of the Cell, vol. 13, no. 11, pp. 3901–3914, 2002.
- Z. Palková and J. Forstová, “Yeast colonies synchronise their growth and development,” Journal of Cell Science, vol. 113, no. 11, pp. 1923–1928, 2000.
- Z. Palkova, B. Janderova, J. Gabriel, B. Zikanova, M. Pospisek, and J. Forstova, “Ammonia mediates communication between yeast colonies,” Nature, vol. 390, no. 6659, pp. 532–536, 1997.
- Z. Palkova and L. Vachova, “Ammonia signaling in yeast colony formation,” International Review of Cytology, vol. 225, pp. 229–272, 2003.
- L. Vachova, H. Kucerova, F. Devaux, M. Ulehlova, and Z. Palkova, “Metabolic diversification of cells during the development of yeast colonies,” Environmental Microbiology, vol. 11, no. 2, pp. 494–504, 2009.
- E. B. Gralla and J. S. Valentine, “Null mutants of Saccharomyces cerevisiae Cu, Zn superoxide dismutase: characterization and spontaneous mutation rates,” Journal of Bacteriology, vol. 173, no. 18, pp. 5918–5920, 1991.
- V. D. Longo, E. B. Gralla, and J. S. Valentine, “Superoxide dismutase activity is essential for stationary phase survival in Saccharomyces cerevisiae. Mitochondrial production of toxic oxygen species in vivo,” The Journal of Biological Chemistry, vol. 271, no. 21, pp. 12275–12280, 1996.
- M. Čáp, L. Váchová, and Z. Palková, “Yeast colony survival depends on metabolic adaptation and cell differentiation rather than on stress defense,” The Journal of Biological Chemistry, vol. 284, no. 47, pp. 32572–32581, 2009.
- L. Váchová, F. Devaux, H. Kučerová, M. Řičicová, C. Jacq, and Z. Palková, “Sok2p transcription factor is involved in adaptive program relevant for long term survival of Saccharomyces cerevisiae colonies,” The Journal of Biological Chemistry, vol. 279, no. 36, pp. 37973–37981, 2004.
- L. Váchová, O. Chernyavskiy, D. Strachotová et al., “Architecture of developing multicellular yeast colony: spatio-temporal expression of Ato1p ammonium exporter,” Environmental Microbiology, vol. 11, no. 7, pp. 1866–1877, 2009.
- S. Büttner, T. Eisenberg, E. Herker, D. Carmona-Gutierrez, G. Kroemer, and F. Madeo, “Why yeast cells can undergo apoptosis: death in times of peace, love, and war,” The Journal of Cell Biology, vol. 175, no. 4, pp. 521–525, 2006.
- D. Carmona-Gutierrez, T. Eisenberg, S. Büttner, C. Meisinger, G. Kroemer, and F. Madeo, “Apoptosis in yeast: triggers, pathways, subroutines,” Cell Death and Differentiation, vol. 17, no. 5, pp. 763–773, 2010.
- C. Allen, S. Büttner, A. D. Aragon et al., “Isolation of quiescent and nonquiescent cells from yeast stationary-phase cultures,” The Journal of Cell Biology, vol. 174, no. 1, pp. 89–100, 2006.
- A. D. Aragon, A. L. Rodriguez, O. Meirelles et al., “Characterization of differentiated quiescent and nonquiescent cells in yeast stationary-phase cultures,” Molecular Biology of the Cell, vol. 19, no. 3, pp. 1271–1280, 2008.
- B. Smets, R. Ghillebert, P. De Snijder et al., “Life in the midst of scarcity: adaptations to nutrient availability in Saccharomyces cerevisiae,” Current Genetics, vol. 56, no. 1, pp. 1–32, 2010.
- A. G. Hinnebusch, “Translational regulation of GCN4 and the general amino acid control of yeast,” Annual Review of Microbiology, vol. 59, pp. 407–450, 2005.
- G. S. Davidson, R. M. Joe, S. Roy et al., “The proteomics of quiescent and nonquiescent cell differentiation in yeast stationary-phase cultures,” Molecular Biology of the Cell, vol. 22, no. 7, pp. 988–998, 2011.
- M. Cap, L. Vachova, and Z. Palkova, “How to survive within a yeast colony?: change metabolism or cope with stress?” Communicative & Integrative Biology, vol. 3, no. 2, pp. 198–200, 2010.
- S. Piccirillo, M. G. White, J. C. Murphy, D. J. Law, and S. M. Honigberg, “The Rim101p/PacC pathway and alkaline pH regulate pattern formation in yeast colonies,” Genetics, vol. 184, no. 3, pp. 707–716, 2010.
- D. Engelberg, A. Mimran, H. Martinetto et al., “Multicellular stalk-like structures in Saccharomyces cerevisiae,” Journal of Bacteriology, vol. 180, no. 15, pp. 3992–3996, 1998.
- R. Scherz, V. Shinder, and D. Engelberg, “Anatomical analysis of Saccharomyces cerevisiae stalk-like structures reveals spatial organization and cell specialization,” Journal of Bacteriology, vol. 183, no. 18, pp. 5402–5413, 2001.
- V. Št'ovíček, L. Váchová, M. Kuthan, and Z. Palková, “General factors important for the formation of structured biofilm-like yeast colonies,” Fungal Genetics and Biology, vol. 47, no. 12, pp. 1012–1022, 2010.
- A. W. Decho, “Microbial biofilms in intertidal systems: an overview,” Continental Shelf Research, vol. 20, no. 10-11, pp. 1257–1273, 2000.
- J. E. Nett, H. Sanchez, M. T. Cain, and D. R. Andes, “Genetic basis of Candida Biofilm resistance due to drug-sequestering matrix glucan,” Journal of Infectious Diseases, vol. 202, no. 1, pp. 171–175, 2010.
- L. M. Joubert, G. M. Wolfaardt, and A. Botha, “Microbial exopolymers link predator and prey in a model yeast biofilm system,” Microbial Ecology, vol. 52, no. 2, pp. 187–197, 2006.