The Role of the Exo-Xis Region in Oxidative Stress-Mediated Induction of Shiga Toxin-Converting Prophages

Table 3

Primers used for PCR.

Primers for bacterial sequences		Primers for phage sequences
Name	Sequence (5′3′)	Name	Sequence (5′3′)
pF_recA	AGATTTCGACGATACGGCCC	pF_λ_int	TTTGATTTCAATTTTGTCCCACT
pR_recA	AACCATCTCTACCGGTTCGC	pR_ λ_int	ACCATGGCATCACAGTATCG
pF_lexA	ATGGATGGTGACTTGCTGGC	pF_λ_xis	TACCGCTGATTCGTGGAACA
pR_lexA	TTCGTCATCAATACGTGCGAC	pR_ λ_xis	GGGTTCGGGAATGCAGGATA
pF_ssb	ATCGAAGGTCAGCTGCGTAC	pF_λ_exo	TGCCGTCACTGCATAAACC
pR_ssb	CGACTTCTGTGGTGTAGCGA	pR_ λ_exo	TCTATCGCGACGAAAGTATGC
pF_recF	CGATACCGGCGCTATACTCC	pF_λ_cIII	ATTCTTTGGGACTCCTGGCTG
pR_recF	TTACGAACAGCTACGCCCG	pR_ λ_cIII	GTAAATTACGTGACGGATGGAAAC
pF_rpoD	GAATCTGAAATCGGGCGCAC	pF_λ_N	CTCGTGATTTCGGTTTGCGA
pR_rpoD	GTCAACAGTTCAACGGTGCC	pR_ λ_N	AAGCAGCAAATCCCCTGTTG
pF_rpoH	GCTTTGGTGGTCGCAACTTT	pF_λ_cI	ACCTCAAGCCAGAATGCAGA
pR_rpoH	TCGCCGTTCACTGGATCAAA	pR_ λ_cI	CCAAAGGTGATGCGGAGAGA
pF_rpoS	TTGCTCTGCGATCTCTTCCG	pF_λ_cro	ATGCGGAAGAGGTAAAGCCC
pR_rpoS	GAACGTTTACCTGCGAACCG	pR_ λ_cro	TGGAATGTGTAAGAGCGGGG
pF_uvrA	GTCCATATCCGCCACTACCG	pF_λ_cII	TCGCAATGCTTGGAACTGAGA
pR_uvrA	TTACCCAACGTCTTGCCGAG	pR_ λ_cII	CCCTCTTCCACCTGCTGATC
pF_ftsK	ACAAACCGTTTATCTGCGCG	pF_λ_O	AATTCTGGCGAATCCTCTGA
pR_ftsK	ATCTTTACCCAGCACCACGG	pR_ λ_O	GAATTGCATCCGGTTT
pF_16SrRNA	CCTTACGACCAGGGCTACAC	pF_λ_Q	TTCTGCGGTAAGCACGAAC
pR_16SrRNA	TTATGAGGTCCGCTTGCTCT	pR_ λ_Q	TGCATCAGATAGTTGATAGCCTTT
		pF_λ_R	ATCGACCGTTGCAGCAATA
		pR_ λ_R	GCTCGAACTGACCATAACCAG
		pF_Φ_int	CAGTTGCCGGTATCCCTGT
		pR_ Φ_int	TGAGGCTTTCTTGCTTGTCA
		pF_Φ_xis	TATCGCGCCGGATGAGTAAG
		pR_ Φ_xis	CGCACAGCTTTGTATAATTTGCG
		pF_Φ_exo	TGCCGTCACTGCATAAACC
		pR_ Φ_exo	TCTATCGCGACGAAAGTATGC
		pF_Φ_cIII	ATTCTTTGGGACTCCTGGCTG
		pR_ Φ_cIII	GTAAATTACGTGACGGATGGAAAC
		pF_Φ_N	AGGCGTTTCGTGAGTACCTT
		pR_ Φ_N	TTACACCGCCCTACTCTAAGC
		pF_Φ_cI	TGCTGTCTCCTTTCACACGA
		pR_ Φ_cI	GCGATGGGTGGCTCAAAATT
		pF_Φ_cro	CGAAGGCTTGTGGAGTTAGC
		pR_ Φ_cro	GTCTTAGGGAGGAAGCCGTT
		pF_Φ_cII	TGATCGCGCAGAAACTGATTTAC
		pR_ Φ_cII	GACAGCCAATCATCTTTGCCA
		pF_Φ_O	AAGCGAGTTTGCCACGAT
		pR_ Φ_O	GAACCCGAACTGCTTACCG
		pF_Φ_Q	GGGAGTGAGGCTTGAGATGG
		pR_ Φ_Q	TACAGAGGTTCTCCCTCCCG
		pF_Φ_R	GGGTGGATGGTAAGCCTGT
		pR_ Φ_R	TAACCCGGTCGCATTTTTC