Review Article
Position Weight Matrix, Gibbs Sampler, and the Associated Significance Tests in Motif Characterization and Prediction
Table 7
Output of PWMS as a quantitative measure of the strength of the identified motifs. Output from DAMBE [
53,
54].
| | SeqName | Motif | Start | Odds-ratio |
| | Seq1 | TTATCA | 18 | 163.6602 | | Seq2 | CGGTCA | 22 | 14.5511 | | Seq3 | CTATCA | 14 | 101.8203 | | Seq4 | AGATAA | 17 | 9.1127 | | Seq5 | TGATTA | 16 | 12.9266 | | Seq6 | CTATCT | 18 | 90.7790 | | Seq7 | TTATCA | 20 | 163.6602 | | Seq8 | TTATCA | 2 | 163.6602 | | Seq9 | CTATAA | 17 | 58.1420 | | Seq10 | CTATCT | 14 | 90.7790 | | Seq11 | TGGTCA | 21 | 23.3886 | | Seq12 | TTGTAA | 33 | 38.9024 | | Seq13 | TTATCT | 20 | 145.9129 | | Seq14 | TTATCT | 2 | 145.9129 | | Seq15 | TTATCA | 10 | 163.6602 | | Seq16 | CTATAA | 3 | 58.1420 | | Seq17 | TTATCC | 13 | 34.3258 | | Seq18 | AGATAT | 20 | 8.1245 | | Seq19 | TGATAA | 16 | 32.0835 | | Seq20 | AGATAA | 24 | 9.1127 | | Seq21 | CTGTAT | 12 | 21.5783 | | Seq22 | CTGTAT | 0 | 21.5783 | | Seq23 | CTATCT | 23 | 90.7790 | | Seq24 | TTGTCT | 4 | 60.7395 | | Seq25 | TTATCT | 17 | 145.9129 | | Seq26 | CTATCG | 15 | 21.2368 | | Seq27 | TTATCA | 19 | 163.6602 | | Seq28 | CTATCT | 15 | 90.7790 | | Seq29 | TTGTCA | 2 | 68.1272 |
| | Mean | | | 76.3120 | | Stdev | | | 57.8163 |
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