Research Article

Conservation of Nucleosome Positions in Duplicated and Orthologous Gene Pairs

Table 1

Duplicated gene pairs in Aspergillus fumigatus.

Gene pairChromosomeGene body regionGene directionFunction

AFUA1G0015012544227017+RING finger protein
AFUA6G09370622455492247121+RING finger protein

AFUA1G004201135528137781+Carboxypeptidase S1, putative
AFUA8G041208897824900076Carboxypeptidase S1, putative

AFUA1G004401138359140093DUF895 domain membrane protein
AFUA8G041108895512897246+DUF895 domain membrane protein

AFUA1G004501143117144466+N-acetylglucosamine-6-phosphate deacetylase(NagA), putative
AFUA8G041008891135892484N-acetylglucosamine-6-phosphate deacetylase(NagA), putative

AFUA1G004701148615150219+Betaine aldehyde dehydrogenase, putative
AFUA8G040808885376886980Betaine aldehyde dehydrogenase (BadH), putative

AFUA1G005301164101164771Thermoresistant gluconokinase family protein
AFUA4G12050431637473164530Thermoresistant gluconokinase

AFUA1G005501177114178593+Hypothetical protein
AFUA1G009101328785330274+Hypothetical protein

AFUA1G005801184790186873+Acid phosphatase (PhoG), putative
AFUA8G040508870757872487Acid phosphatase (PhoG), putative

AFUA1G006501215584217006+Alpha-1,3-glucanase, putative
AFUA7G08510719733981974759+Alpha-1,3-glucanase, putative

AFUA1G009201331676332955Hypothetical protein
AFUA3G06425315827481584037Hypothetical protein

AFUA1G010501385302386244Hypothetical protein
AFUA8G06160814656951466634+Hypothetical protein

AFUA1G025501744583746335Tubulin alpha-1 subunit
AFUA2G14990239470083948834Tubulin alpha-2 subunit

AFUA1G027301788249789373Mitochondrial phosphate carrier protein (Ptp), putative
AFUA1G15140140702304071449Mitochondrial phosphate carrier protein (Mir1), putative

AFUA1G05760116583821659697Arsenite efflux transporter
AFUA5G15010538824253883746+Arsenite permease (ArsB), putative

AFUA1G05760116583821659697Arsenite efflux transporter
AFUA1G16100143788984380216+Arsenite permease (ArsB), putative

AFUA1G10910128481552850137Tubulin beta, putative
AFUA7G0025077022171948+Tubulin beta-2 subunit

AFUA1G11260129715292971889Conserved hypothetical protein
AFUA6G0027067954279886Conserved hypothetical protein

AFUA1G11610130600583060510+3-Dehydroquinate dehydratase, type II
AFUA3G14850339297213930173+3-Dehydroquinate dehydratase, type II

AFUA1G11890131294473131489+Serine palmitoyltransferase 2, putative
AFUA6G0030068585187692Serine palmitoyltransferase 1, putative

AFUA1G12850133988373400611+Nitrate transporter (nitrate permease)
AFUA1G17470147823204783995+High-affinity nitrate transporter NrtB

AFUA1G15970143384074339712+Aldo-keto reductase (AKR13), putative
AFUA8G015608401581402815Aldo-keto reductase (YakC), putative

AFUA1G16030143588664360256Conserved hypothetical protein
AFUA5G14930538632183864521Conserved hypothetical protein

AFUA1G16040143634934365310+Metalloreductase, putative
AFUA5G14940538677973869542+Cell surface metalloreductase (FreA), putative

AFUA1G16050143665734368232+Hypothetical protein
AFUA5G14950538706353872465+Hypothetical protein

AFUA1G16070143703464373694+Conserved hypothetical protein
AFUA5G14980538745393877890+Conserved hypothetical protein

AFUA1G16080143745794375298Hypothetical protein
AFUA5G14990538787973879579Hypothetical protein

AFUA1G16090143778424378249Arsenate reductase (ArsC), putative
AFUA5G15000538813863881835Arsenate reductase (ArsC), putative

AFUA1G16100143788984380216+Arsenite permease (ArsB), putative
AFUA5G15010538824253883746+Arsenite permease (ArsB), putative

AFUA1G16110143804744381455Arsenic methyltransferase (Cyt19), putative
AFUA5G15020538839293884993Arsenic methyltransferase (Cyt19), putative

AFUA1G16120143856504386671Arsenic resistance protein (ArsH), putative
AFUA8G07150817516931752688+ArsH protein

AFUA1G16120143856504386671Arsenic resistance protein (ArsH), putative
AFUA5G15030538872873888230Arsenic resistance protein (ArsH), putative

AFUA2G008002178081179459PelA protein
AFUA5G10380526586562659968+Pectin lyase, putative

AFUA2G008002178081179459PelA protein
AFUA7G05030711821041183794Pectin lyase B

AFUA2G04010210929731094679Alpha, alpha-trehalose-phosphate synthase subunit, putative
AFUA6G12950632689583270783+Alpha, alpha-trehalose-phosphate Synthase subunitTPS1, putative

AFUA2G11270228972752904954Alpha-1,3-glucan synthase, putative
AFUA3G009103210186217666+Alpha-1,3-glucan synthase, putative

AFUA3G0034037118672734+Glycosyl hydrolase, putative
AFUA4G027204751306752715Glycosyl hydrolase, putative

AFUA3G006803151397153549Copper amine oxidase
AFUA7G041807943893946136+Amine oxidase

AFUA3G015603393032394802Aminoacid permease, putative
AFUA5G04260511409531142714+Arginine transporter, putative

AFUA3G024203597476598286+ThiJ/PfpI family protein
AFUA4G014004369123369944ThiJ/PfpI family protein

AFUA3G030803824479825425+Endo-1,3(4)-beta-glucanase, putative
AFUA6G14540637024163703383Endo-1,3(4)-beta-glucanase, putative

AFUA3G03980311346091136404+Cytochrome P450 monooxygenase, putative
AFUA5G10050525893012591081Cytochrome P450 monooxygenase, putative

AFUA3G08160320942232095759Eukaryotic translation initiation Factor eIF4A, putative
AFUA5G024105621886623486DEAD/DEAH box helicase, putative

AFUA3G14420338318683834921+Chitin synthase G
AFUA5G007605211013213795+Chitin synthase C

AFUA4G005104133477135102Hypothetical protein
AFUA7G08600720094362011052+Hypothetical protein

AFUA4G031104868474870249Monosaccharide transporter
AFUA5G10690527373482739178Monosaccharide transporter

AFUA4G03680410315861032539Oxidoreductase, short-chain dehydrogenase/reductase family
AFUA6G035206764308765294Short-chain dehydrogenase/reductase family protein, putative

AFUA4G09440424629202466158Sodium P-type ATPase, putative
AFUA6G036906810027813362Sodium transport ATPase, putative

AFUA4G14360437743073776166+Capsular associated protein, putative
AFUA5G07560518897911891689Capsular associated protein, putative

AFUA5G0014551574916327Hypothetical protein
AFUA6G11710629159032916483+Conserved hypothetical protein

AFUA5G0014551574916327Hypothetical protein
AFUA7G08440719423191942804+Hypothetical protein

AFUA5G010305266294267439Glyceraldehyde 3-phosphate dehydrogenase(Ccg-7), putative
AFUA5G019705503797505194+Glyceraldehyde 3-phosphate dehydrogenase GpdA

AFUA5G06240514944551495619Alcohol dehydrogenase, putative
AFUA7G010107270494271675Alcohol dehydrogenase, putative

AFUA5G07980520190692020841+Hypothetical protein
AFUA5G14920538573503859167+Hypothetical protein

AFUA5G09130523456892346728Polysaccharide deacetylase family protein
AFUA6G05030611958461196956+Polysaccharide deacetylase family protein

AFUA5G15030538872873888230Arsenic resistance protein (ArsH), putative
AFUA8G07150817516931752688+ArsH protein

AFUA6G06750614752391476209+14-3-3 family protein
AFUA2G03290286720386825014-3-3 family protein ArtA, putative

AFUA6G07070615876431589124+Cellobiohydrolase D
AFUA6G116106287807828796761,4-beta-D-glucan-cellobiohydrolyase, putative

AFUA6G11430628371402839051+Aldehyde dehydrogenase, putative
AFUA7G010007267518269163Aldehyde dehydrogenase, putative

AFUA6G11710629159032916483+Conserved hypothetical protein
AFUA7G08440719423191942804+Hypothetical protein

AFUA6G13490634319123433612Glutamate decarboxylase
AFUA8G06020814288121430515+Glutamate decarboxylase

AFUA7G003607102030103064UDP-galactose 4-epimerase, putative
AFUA8G008608203496204338+UDP-galactose 4-epimerase, putative

AFUA7G07050717256861726402Hypothetical protein
AFUA7G08300718702441870960Hypothetical protein

AFUA7G07060717288761732992Hypothetical protein
AFUA7G08310718734371877817Hypothetical protein