Research Article

Conservation of Nucleosome Positions in Duplicated and Orthologous Gene Pairs

Table 3

Genes of Saccharomyces cerevisiae with highly conserved nucleosome positions in the promoters of the control and histone modification gene deletion mutants.

ChromosomeGeneCorrelation coefficient between the control and the ELP3 deletionCorrelation coefficient between the control and the HOS2 deletionTranslational start siteTranscription direction

chr01YAL064W-B0.9747199550.96581424312047+
chr01YAL056W0.9898010030.98215732839260+
chr01YAL047C0.9502436910.95312923256858
chr01YAR019C0.9701151620.960628643175133
chr01YAR033W0.9688078750.987221166188101+
chr02YBL111C0.9958020650.994550655009
chr02YBL108C-A0.9594970130.9699665427733
chr02YBL101C0.9585171250.99132409628299
chr02YBL087C0.957191870.95727320360735
chr02YBL061C0.9849602120.992728731107408
chr02YBL060W0.9603302890.99357258107934+
chr02YBL051C0.976537340.989165943124762
chr02YBL032W0.9568748540.980366627160187+
chr02YBL005W-B0.9507813220.952679326221333+
chr02YBL005W-A0.9507813220.952679326221333+
chr02YBR023C0.9602384990.992906362287925
chr02YBR029C0.9592313890.987222377297742
chr02YBR047W0.9645645220.963289004331831+
chr02YBR060C0.9592298710.974718825362512
chr02YBR084W0.9621728660.981530879411048+
chr02YBR090C0.9676587850.971792497427052
chr02YBR091C0.9650378620.985960321427478
chr02YBR131W0.9533232490.969685452497157+
chr02YBR136W0.9635468220.974854426505662+
chr02YBR173C0.9785183910.961438459582167
chr02YBR179C0.9884891460.991754907589109
chr02YBR180W0.9871322120.975974209589736+
chr02YBR204C0.9709589460.978433534633376
chr02YBR243C0.9722534670.961252065706788
chr02YBR244W0.9742023060.992702483707523+
chr02YBR249C0.9557426820.976101912717989
chr02YBR250W0.9541491880.976352348719028+
chr02YBR251W0.962732610.961120273721385+
chr02YBR258C0.9666018990.955155711730157
chr02YBR260C0.9693460190.970918059734634
chr02YBR279W0.9560813870.964626558761253+
chr02YBR290W0.9815868230.967935658782587+
chr03YCL064C0.9571506980.9527051416880
chr03YCL058W-A0.9698953450.99239482923584+
chr03YCL057C-A0.9908861920.98717057624325
chr03YCL057W0.9630623570.96180462324768+
chr03YCL038C0.9782105370.95763354856527
chr03YCL035C0.9813607050.97356815161173
chr03YCL019W0.9532416640.97868845985102+
chr03YCR026C0.968866650.97932414166335
chr03YCR043C0.9517648640.966166673206640
chr03YCR053W0.9897282410.992623598216693+
chr03YCR087C-A0.9753989190.993232435264464
chr03YCR090C0.9656372940.95018878272860
chr03YCR108C0.9858030860.993860549316185
chr04YDL248W0.9647013650.9802173261802+
chr04YDL247W0.9896861990.9979977415985+
chr04YDL233W0.9576722520.9785748936798+
chr04YDL232W0.9795926860.97041347738488+
chr04YDL225W0.9500531330.97844134852446+
chr04YDL208W0.9872648930.98789479487513+
chr04YDL189W0.9658153560.98561241122217+
chr04YDL174C0.9562155710.953787348147590
chr04YDL147W0.9717550590.950911485190925+
chr04YDL116W0.9659361230.976379579251566+
chr04YDL110C0.9742382540.97295169264964
chr04YDL102W0.9577865380.980122821276872+
chr04YDL085W0.978879370.960150217303211+
chr04YDL035C0.9755732120.977145228392054
chr04YDL025C0.961346730.972526893407203
chr04YDR019C0.952697720.953635877485362
chr04YDR028C0.9609374360.959981321500876
chr04YDR034C-C0.9672226360.9814374519353
chr04YDR034C-D0.9672226360.981437429519353
chr04YDR037W0.9513652920.956861294525437+
chr04YDR054C0.9559288020.982048103562325
chr04YDR055W0.9503210120.952540035563525+
chr04YDR062W0.9740218330.967688258576471+
chr04YDR109C0.9543961630.952291074675664
chr04YDR110W0.9860819050.974555387676099+
chr04YDR120C0.9602008450.969981962693258
chr04YDR162C0.9673017410.984347121781097
chr04YDR233C0.9670240580.967951444930353
chr04YDR234W0.9674151590.980945022931125+
chr04YDR238C0.976026420.973622232940812
chr04YDR261C-D0.9848486460.993722663992345
chr04YDR261C-C0.9848486460.9937227992345
chr04YDR262W0.9909893970.995915841993130+
chr04YDR270W0.9511398260.962635341005671+
chr04YDR281C0.9846193290.9593929091022317
chr04YDR300C0.9758496440.9716779381062787
chr04YDR301W0.9529233410.9775152221063348+
chr04YDR307W0.9519188860.9700336261075861+
chr04YDR310C0.9517239310.9692731531084312
chr04YDR311W0.9536853570.9805957381085062+
chr04YDR317W0.989692210.9915980491102181+
chr04YDR322W0.9548432720.972043121110586+
chr04YDR328C0.9574219930.9839578351126013
chr04YDR334W0.9530302880.9631555121135927+
chr04YDR359C0.9774891720.9696060291194877
chr04YDR365C0.9850735440.9989266111206375
chr04YDR367W0.9900418050.9946892011212840+
chr04YDR369C0.9576559190.969873051217572
chr04YDR379W0.9628990570.9749398211230159+
chr04YDR397C0.9662989180.9751333371266890
chr04YDR420W0.9712171770.9918869411306259+
chr04YDR424C0.9668818080.9898132331319833
chr04YDR432W0.9557287380.9821717181328775+
chr04YDR438W0.9716269250.989040821338266+
chr04YDR444W0.9735664330.9765024471350282+
chr04YDR453C0.9526614920.9544810141365654
chr04YDR476C0.9699401590.9646792791411119
chr04YDR477W0.9547433430.9792437381412365+
chr04YDR479C0.9774608250.9945017861416866
chr04YDR480W0.9677270740.9869534031417391+
chr04YDR488C0.9831145120.9791871551430781
chr04YDR497C0.9558554120.9582365771445459
chr04YDR529C0.9662735760.9718120761496540
chr05YEL072W0.9681319130.97743553413720+
chr05YEL043W0.9790798580.9622770670478+
chr05YEL038W0.9815722210.98836915180462+
chr05YEL021W0.9513154750.951565922116167+
chr05YER004W0.9563486380.987671859159579+
chr05YER026C0.9649528970.993875293208473
chr05YER076C0.9653982440.971982059313494
chr05YER083C0.9531850480.981521771327027
chr05YER094C0.9760270490.982595427349342
chr05YER095W0.9634236190.988752501349976+
chr05YER107C0.9820249410.98488468374541
chr05YER109C0.9693717540.986034001377610
chr05YER173W0.9604968270.952930419536295+
chr05YER188C-A0.9914892930.996538184569902
chr05YER189W0.9970571080.998333831571150+
chr06YFL066C0.9700123720.9930984152615
chr06YFL065C0.9570349430.970046823338
chr06YFL060C0.9877573120.99513827410969
chr06YFL059W0.9762052350.96219511711363+
chr06YFL058W0.97509410.99447476812929+
chr06YFL028C0.9662445220.95930834680211
chr06YFL026W0.9577552070.95271187382578+
chr06YFR009W0.9792002580.985708335162482+
chr06YFR013W0.9729589710.986214291169914+
chr06YFR037C0.9654159150.972070667229173
chr07YGL255W0.9613662080.97206231620978+
chr07YGL248W0.9713697470.97175684135653+
chr07YGL223C0.9562152180.98499492480364
chr07YGL215W0.9658613390.9518115487980+
chr07YGL201C0.9542963360.979120204120911
chr07YGL180W0.9820842990.994334205160071+
chr07YGL171W0.9693219820.974163208182396+
chr07YGL163C0.9758258250.968348392196409
chr07YGL138C0.9712471450.983410766249536
chr07YGL120C0.9814526390.964320425283943
chr07YGL119W0.9866102250.981525372284448+
chr07YGL108C0.9618403260.985939242304074
chr07YGL058W0.9777324940.975176081393992+
chr07YGL056C0.9604263780.969119302397624
chr07YGL055W0.9640448250.969447792398631+
chr07YGL048C0.9714029150.953304338411289
chr07YGL043W0.9642876610.976335397417487+
chr07YGL028C0.9600779190.965512687442914
chr07YGL006W0.9501518160.968357705485925+
chr07YGR001C0.9586213560.990717019498038
chr07YGR006W0.9808775920.97721459506074+
chr07YGR027W-B0.9735859990.969942324536061+
chr07YGR027W-A0.9735859990.969942324536061+
chr07YGR054W0.9644342730.980689617596697+
chr07YGR076C0.9815881540.958402031637581
chr07YGR082W0.9864337990.977608093644048+
chr07YGR084C0.9528795950.959716787648146
chr07YGR109C0.9670370710.989224447706505
chr07YGR109W-B0.9644338380.990506548707614+
chr07YGR109W-A0.9644338380.990506548707614+
chr07YGR149W0.9572441220.960107682789036+
chr07YGR161W-B0.9584552970.972873884811743+
chr07YGR161W-A0.9584552970.9728739811743+
chr07YGR161C-D0.97118820.974318881823020
chr07YGR161C-C0.97118820.9743189823020
chr07YGR162W0.9671525620.972476532824064+
chr07YGR165W0.9598886580.951709091829121+
chr07YGR166W0.9784819230.950610672830520+
chr07YGR173W0.9789467490.974220242843859+
chr07YGR178C0.973381860.951056442853220
chr07YGR193C0.9777031850.9816188885746
chr07YGR198W0.9548897660.972754857894698+
chr07YGR239C0.9688883250.989258725970058
chr07YGR240C0.9663133710.971843468973739
chr07YGR255C0.9665830580.9916660261003967
chr07YGR267C0.9602787780.9697074881025741
chr07YGR280C0.9610845050.9526709931051732
chr07YGR295C0.9672869440.9644573861082736
chr07YGR296W0.9711309140.9911852951084871+
chr08YHL044W0.9587255080.96553801713563+
chr08YHL029C0.9889470370.96676058647966
chr08YHL028W0.9830346850.97704341148761+
chr08YHL024W0.9616455820.96663362756647+
chr08YHL020C0.9780138710.98690125967453
chr08YHL016C0.9760828160.98840843274241
chr08YHL007C0.9738477480.98129330697933
chr08YHL004W0.974187660.99367769399215+
chr08YHL001W0.9590215840.965334128104272+
chr08YHR001W-A0.9916442560.988918444107821+
chr08YHR056C0.9728369670.982728846217836
chr08YHR081W0.9617200790.960688905267540+
chr08YHR091C0.9556951210.987437891286772
chr08YHR101C0.9848203980.996893941315971
chr08YHR102W0.961272010.995534701316575+
chr08YHR107C0.9502504960.982165489328039
chr08YHR118C0.9737253050.961118169345631
chr08YHR127W0.950141040.981438554360916+
chr08YHR136C0.9534760260.965665058375103
chr08YHR148W0.9785851980.950179497393537+
chr08YHR153C0.9594145180.982780385402685
chr08YHR165C0.9587470680.984253541436950
chr08YHR214C-D0.9879512070.966688891550941
chr08YHR215W0.9879512070.966688891552099+
chr08YHR216W0.9729485540.975124764554396+
chr09YIL158W0.9615791170.95738644646201+
chr09YIL154C0.9544010730.97189253555021
chr09YIL137C0.9760102830.97681077592788
chr09YIL135C0.9760897910.97961392196375
chr09YIL134W0.9745410940.97914877197395+
chr09YIL129C0.9582278190.99048832113237
chr09YIL125W0.9630702110.960333013122689+
chr09YIL063C0.9709562530.957414461243741
chr09YIL061C0.953949650.989156182245556
chr09YIL046W0.9672099580.952996831268650+
chr09YIL033C0.9890174770.989306501291668
chr09YIL031W0.9857999220.98683422292632+
chr09YIL030C0.9574490180.97109633300008
chr09YIR022W0.9606367070.971998311398730+
chr09YIR024C0.9615692190.970038905403488
chr09YIR038C0.9731083580.975735046424510
chr10YJL221C0.9928893330.99540976318536
chr10YJL219W0.9928893330.99540976319497+
chr10YJL197W0.9630171160.96733902163804+
chr10YJL181W0.9715677530.97122511785658+
chr10YJL176C0.9798908650.96753545994528
chr10YJL174W0.9834740820.982204395090+
chr10YJL173C0.9868676680.98939840696527
chr10YJL151C0.9529762290.987631587136770
chr10YJL149W0.9757566480.990848833137376+
chr10YJL118W0.9532681120.959468203191638+
chr10YJL113W0.9829403630.963188993197913+
chr10YJL114W0.9829403630.963188993197913+
chr10YJL093C0.9676758820.964352732256807
chr10YJL092W0.9632407190.958166876257418+
chr10YJL066C0.9539826780.974252054314867
chr10YJL050W0.9506773640.95235067342517+
chr10YJL048C0.961326410.958967756348632
chr10YJL039C0.9509189530.970557445373794
chr10YJL034W0.9633478040.980266739381322+
chr10YJR010W0.9716678540.97428271456232+
chr10YJR021C0.9567627210.994264722469572
chr10YJR029W0.9580705470.974229894478337+
chr10YJR028W0.9580705470.9742299478337+
chr10YJR041C0.9766180810.981063923513756
chr10YJR048W0.9606062450.975055837526328+
chr10YJR049C0.9549834640.986149168528469
chr10YJR055W0.9769321130.992763445538765+
chr10YJR065C0.9755697290.987649101559151
chr10YJR095W0.970474950.971814385609769+
chr10YJR113C0.9692282690.954716018638969
chr10YJR115W0.9524858580.960980837639936+
chr10YJR141W0.9573491890.956946497695900+
chr10YJR160C0.9782685210.997490962739810
chr10YJR161C0.9652512690.976575544743993
chr11YKL191W0.9509332510.97899376481040+
chr11YKL179C0.9757074330.967918905112508
chr11YKL167C0.9560856160.955561088134139
chr11YKL165C0.9606094230.966621061140696
chr11YKL157W0.956352770.9813363154996+
chr11YKL127W0.9559856610.982208081203185+
chr11YKL125W0.9764497520.960074911207891+
chr11YKL113C0.9715446120.954413703225519
chr11YKL065C0.960055410.969818928316701
chr11YKL064W0.9746442570.972632809317408+
chr11YKL059C0.9571539570.961241915329087
chr11YKL020C0.9558602530.977812511401723
chr11YKL013C0.9729589780.953444609417666
chr11YKR007W0.9813871040.972277081451077+
chr11YKR024C0.9719440380.981215773487015
chr11YKR031C0.9521235520.969614994506037
chr11YKR036C0.9593401920.988104612510275
chr11YKR041W0.9827865970.957524998517840+
chr11YKR052C0.9543923730.96688713533106
chr11YKR082W0.9629316160.991018501592467+
chr11YKR084C0.9532286620.976903834598532
chr11YKR086W0.9520066080.976533657599499+
chr12YLL050C0.9761796730.99069533940413
chr12YLL002W0.9726888740.981122544146290+
chr12YLR001C0.9662067240.98012374153976
chr12YLR012C0.9565166330.962463803170280
chr12YLR013W0.9788738490.985557204171338+
chr12YLR024C0.9534428680.956160837193282
chr12YLR025W0.9714680390.96202948194453+
chr12YLR029C0.9616379280.991619508202591
chr12YLR059C0.9634506260.974770886260548
chr12YLR085C0.95601630.984640913301990
chr12YLR087C0.9537044780.990085627315732
chr12YLR096W0.9779664770.979318401332591+
chr12YLR104W0.9661745530.97921157346586+
chr12YLR133W0.9613073330.951823465408446+
chr12YLR135W0.9775604940.977991425413282+
chr12YLR137W0.9671741930.983596278417007+
chr12YLR162W-A0.9681232190.962766706490407+
chr12YLR208W0.968026840.969296393559553+
chr12YLR223C0.9667839740.974989936585492
chr12YLR224W0.9745827950.978003757586466+
chr12YLR286C0.9722313180.978358686710138
chr12YLR299W0.9626254180.970226227726071+
chr12YLR307W0.9627102230.990591743745622+
chr12YLR323C0.9532055940.975247431778952
chr12YLR326W0.9797695760.991583861782174+
chr12YLR355C0.9678584740.973834311839252
chr12YLR356W0.9682778820.974767083840320+
chr12YLR378C0.9741223580.977246394877177
chr12YLR380W0.9732585080.97821865878282+
chr12YLR410W-A0.9515450110.9529714941481+
chr12YLR410W-B0.9515450110.952971407941481+
chr12YLR426W0.96689810.990317101987059+
chr12YLR427W0.9686315880.972538491988425+
chr12YLR429W0.9504645440.951528134990774+
chr12YLR443W0.9645256560.9914400981022622+
chr13YML121W0.9746590110.98596958426930+
chr13YML115C0.973379940.99606349241794
chr13YML080W0.9893020360.986381735108806+
chr13YML078W0.9758731080.974136336111002+
chr13YML045W0.9930164160.993250991184461+
chr13YML045W-A0.9930164160.993251184461+
chr13YML041C0.9698018210.979224272195755
chr13YML020W0.9752606830.95439232231149+
chr13YML004C0.9666163770.98388072262685
chr13YML003W0.9683389120.981828638263483+
chr13YMR010W0.9857743260.979191015285099+
chr13YMR011W0.9637329810.981283867288078+
chr13YMR027W0.9610419930.957831173325876+
chr13YMR036C0.9692601920.963784402343519
chr13YMR060C0.9900188050.990517987392514
chr13YMR066W0.983211650.95995151401540+
chr13YMR078C0.9693929410.976546196424727
chr13YMR081C0.9812543120.956294421431094
chr13YMR110C0.9614246210.983151943491991
chr13YMR116C0.9771298490.989254306500687
chr13YMR137C0.9719718450.978526214544962
chr13YMR138W0.9786348590.963362392545154+
chr13YMR152W0.9589134220.961601086563095+
chr13YMR197C0.9604642240.981756931659197
chr13YMR210W0.9745793810.983178959687515+
chr13YMR214W0.9779060770.988639434695349+
chr13YMR219W0.9645559740.962486321707132+
chr13YMR224C0.9750631270.950620617720652
chr13YMR229C0.9605145540.957025636731122
chr13YMR241W0.9562259010.967912184751960+
chr13YMR319C0.9503407690.968043162914536
chr14YNL339C0.9752213240.9973730726098
chr14YNL334C0.9688657340.99122817512876
chr14YNL322C0.9547062460.97779920334234
chr14YNL311C0.9868140030.99378230751687
chr14YNL310C0.9568527020.98051647152430
chr14YNL309W0.9880622150.99382549952661+
chr14YNL301C0.9681079970.96668087664562
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