Table 3: Upregulated SuperSAGE tags associated via Gene Ontology (GO) to abiotic stress, with fold change for T (FCT = TD/TC) and D (FCD = TD/SD) comparisons for tag frequencies in the sugarcane roots libraries, as well as the annotation of the best aligned EST.

TagGOFCTFCDAnnotation

SD159390AJ5.6ns50S ribosomal prot. L5, chloroplast
SD191288AJ2.92.3AP2 domain transcription factor EREBP
SD122727AJ2.22.7Bet v I allergen-like
SD75453AJ2.82.8Chromatin-remodeling factor CHD3
SD123546AJ1.6nsChromatin-remodeling factor CHD3
SD9608AJ2.43.3Initiator-binding prot.; ibp
SD15756AJ1.91.6OSK1; SNF1-related prot. Kinase
SD108270AJ6.42.6ZIM motif family prot.
SD258836AJ3.1nsZIM motif family prot.
SD108269AJ2.92.1ZIM motif family prot.
SD133809AJ2.82.6ZIM motif family prot.
SD196399AJ/Os3.23.2P18; Nucleoside diphosphate kinase I; NDK1
SD169158AJ/Os/Ox3.2nsPeptidyl-prolyl cis-trans isomerase
SD252082AJ/WH3.63.6Auxin-induced prot.
SD237930AJ/WH/Os2.4ns18S ribosomal RNA gene
SD282917AJ/WH/Os1.51.6ABA responsive element binding factor 2
SD237939AJ/WH/Os6.86.8Branched-chain-amino-acid aminotransf.
SD238059AJ/WH/Os2.42.4Branched-chain-amino-acid aminotransf.
SD140270AJ/WH/Os3.2nsviviparous-14
SD237936AJ/WH/Os/Ox2.82.8Ribosomal prot. L28e domain cont. prot.
SD178862AJ/WH/Os/Ox2.82.818S ribosomal RNA gene
SD203616WH1.3nsRAP2-like prot.
SD246714WH2.82.8CoA-thioester hydrolase CHY1
SD286424WH1.42.6ERF/AP2 domain cont. transcription factor
SD279457WH2.8nsMitochondrial uncoupling prot. 2
SD107875WH3.75.2Nucleic acid binding
SD191687WH2.16.9RAPB prot.
SD147607WH5.6nsSalt tolerance prot.
SD109060WH1.41.3Transposable element Mu1 sequence
SD199146Os1.11.1Alpha tubulin-4a
SD54073Os2.36.8Calreticulin-like prot.
SD102228Os6.86.8Endo-1,4-beta-glucanase Cel1
SD80163Os4.7nsEndo-1,4-beta-glucanase Cel1
SD13344Os1.9nsEukaryotic translation if 2 alpha sub family
SD182876Os4.4nsPhosphopantetheine adenylyl transf. dephospho CoA kinase
SD129463Os3.0nsSerine/threonine-prot. kinase SAPK1
SD87319Os2.41.6Serine/threonine-prot. kinase SAPK6
SD270381Ox6.54.5Allene oxide synthase
SD272257Ox2.4nsAllene oxide synthase
SD63148Ox2.02.5Allene oxide synthase
SD113907Ox2.42.4Brassinosteroid biosynthesis-like prot.
SD219102Ox3.2nsGlutathione peroxidase
SD213044Ox2.22.4Na+/H+ antiporter
SD54454Ox2.03.1Nicotianamine aminotransferase A
SD125582Ox3.81.9Nicotinate phosphoribosyltransferase-like
SD122742Ox3.2nsNucleotide repair prot.
SD102844Ox1.6nsPeroxidase precursor
SD17103Ox6.4nsTyrosine/nicotianamine aminotransf. family
SD17107Ox2.5nsTyrosine/nicotianamine aminotransf. family
SD17108Ox1.8nsTyrosine/nicotianamine aminotransf. family
SD151691WH/Os1.81.6DRF-like transcription factor DRFL2a
SD9805WH/Os25.025.0Glycine-rich RNA binding prot.
SD9802WH/Os14.714.7Glycine-rich RNA binding prot.
SD9806WH/Os13.113.1Glycine-rich RNA binding prot.
SD9767WH/Os2.82.8Glycine-rich RNA binding prot.
SD9803WH/Os2.42.4Glycine-rich RNA binding prot.
SD9800WH/Os2.42.4Glycine-rich RNA binding prot.
SD9801WH/Os1.1nsGlycine-rich RNA binding prot.
SD108120WH/Os6.06.0Glycine-rich RNA-binding prot.
SD108115WH/Os1.31.3Glycine-rich RNA-binding prot. 2; GRP2
SD264077WH/Os3.6nsMembrane integral prot.
SD92627WH/Ox5.72.4Glutathione transferase III
SD243418WH/Ox4.0nsSerine hydroxymethyltransferase
SD179937WH/Ox3.82.5Serine hydroxymethyltransferase
SD21923WH/Ox1.31.7Whitefly-induced gp91-phox
SD184083Os/Ox3.23.2Delta-1-pyrroline-5-carboxylate dehydrog.
SD8088Os/Ox3.2nsMutT domain prot.-like
SD251703Os/Ox7.1nsP5cs; delta 1-pyrroline-5-carboxylate synth.

Libraries [TD: drought-tolerant bulk under stress; TC: tolerant bulk control; SD: drought-sensitive bulk under stress]; ns: fold change of tag not significant ( 𝑃 0 . 0 5 ). WH: response to water deprivation and to heat/cold; Os: response to osmotic stress, Ox: response to oxidative stress; AJ: response to abscisic acid stimulus and to jasmonic acid stimulus.