Genetic Diversity of Arabica Coffee (Coffea arabica L.) in Nicaragua as Estimated by Simple Sequence Repeat Markers
Table 3
The partitioning of total gene diversity into within and among variety components for eight polymorphic SSR loci, and the number of alleles observed at each locus.
Variety
HSSR03
HCM5
HCaM35
HSat207
HCaM16
HCaM03
H471
HSSR09
Overall
Bourbon
0.136
0.500
0.036
0.501
0.075
0.516
0.166
0.500
0.304
Catuai amarillo
0.142
0.500
0.000
0.504
0.000
0.499
0.000
0.384
0.254
Catimor
0.241
0.500
0.000
0.506
0.224
0.538
0.387
0.556
0.369
Catuai rojo
0.048
0.500
0.000
0.500
0.000
0.498
0.000
0.433
0.247
Caturra
0.136
0.500
0.000
0.500
0.060
0.525
0.140
0.468
0.291
Maracaturra
0.000
0.500
0.000
0.500
0.000
0.420
0.000
0.480
0.238
Pacas
0.139
0.500
0.000
0.500
0.000
0.420
0.465
0.375
0.300
Pacamaras
0.049
0.500
0.000
0.500
0.180
0.480
0.000
0.480
0.274
HS
0.136
0.500
0.007
0.502
0.070
0.509
0.141
0.465
0.291
HT
0.229
0.500
0.008
0.503
0.186
0.536
0.310
0.550
0.353
GST
0.409
0.000
0.091
0.002
0.624
0.051
0.544
0.154
0.234
NA
2
2
2
4
2
2
3
3
2.5 (2.0)*
*The mean number of alleles for the eight polymorphic loci and for all loci including monomorphic ones is 2.5 and 2.0, respectively.
