TOPPER: Topology Prediction of Transmembrane Protein Based on Evidential Reasoning

Table 1

Confusion matrices of residue prediction for various algorithms.

Truth	Algorithm		Prediction
		i	M	o
	OCTOPUS	7655	389	839
	PRO	7574	450	859
i	PRODIV	7323	442	1118
	SCAMPI-msa	7655	389	839
	SCAMPI-seq	7359	455	1069
	TOPPER	7636	358	889
	OCTOPUS	1877	9785	1458
	PRO	1922	9588	1610
M	PRODIV	1819	9884	1417
	SCAMPI-msa	1877	9785	1458
	SCAMPI-seq	1907	9628	1585
	TOPPER	1799	9817	1504
	OCTOPUS	1230	578	6091
	PRO	1051	714	6134
o	PRODIV	1117	775	6007
	SCAMPI-msa	1230	578	6091
	SCAMPI-seq	1101	564	6234
	TOPPER	916	518	6465