Research Article
TOPPER: Topology Prediction of Transmembrane Protein Based on Evidential Reasoning
Table 1
Confusion matrices of residue prediction for various algorithms.
| Truth
| Algorithm
| | Prediction | | i | M | o |
| | OCTOPUS | 7655 | 389 | 839 | | PRO | 7574 | 450 | 859 | i | PRODIV | 7323 | 442 | 1118 | SCAMPI-msa | 7655 | 389 | 839 | | SCAMPI-seq | 7359 | 455 | 1069 | | TOPPER | 7636 | 358 | 889 |
| | OCTOPUS | 1877 | 9785 | 1458 | | PRO | 1922 | 9588 | 1610 | M | PRODIV | 1819 | 9884 | 1417 | SCAMPI-msa | 1877 | 9785 | 1458 | | SCAMPI-seq | 1907 | 9628 | 1585 | | TOPPER | 1799 | 9817 | 1504 |
| | OCTOPUS | 1230 | 578 | 6091 | | PRO | 1051 | 714 | 6134 | o | PRODIV | 1117 | 775 | 6007 | SCAMPI-msa | 1230 | 578 | 6091 | | SCAMPI-seq | 1101 | 564 | 6234 | | TOPPER | 916 | 518 | 6465 |
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