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The Scientific World Journal
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2013
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Article
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Tab 1
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Review Article
RNA Editing and Drug Discovery for Cancer Therapy
Table 1
RNA editing bioinformatics resources.
Tools
Functions (Web sites)
dbRES [
36
]
A database for annotated RNA editing sites. (
http://bioinfo.au.tsinghua.edu.cn/dbRES
)
DARNED [
37
,
38
]
A database of RNA editing in humans and model organisms with Wikipedia. (
http://darned.ucc.ie
)
miR-EdiTar [
39
]
A database of predicted A-to-I edited miRNA target sites. (
http://microrna.osumc.edu/mireditar
)
ExpEdit [
40
]
A webserver for human RNA editing in RNA-Seq experiments. (
http://www.caspur.it/ExpEdit/
)
RNA-eXpress [
41
]
An annotation tool for novel transcript features in RNA-Seq data including RNA editing and others. (
http://www.rnaexpress.org
)
GOBASE [
42
]
An organelle genome database with an interface for RNA editing data and others using multiple alignments. (
http://gobase.bcm.umontreal.ca/
)
REDIdb [
43
]
A database for organellar RNA editing sites. (
http://biologia.unical.it/py_script/REDIdb
)
PREPACT 2.0 [
44
]
Predicting RNA editing in organelle genome sequences with multiple references and curated RNA editing annotation. (
http://www.prepact.de
)