Table 1: Description of sequenced TAS3-like loci in mosses.

Class/subclass OrderSpecies aClone/cluster bLength,
bp
cReference and/or accession number dOrganization
(one- or two-tasiARF/AP2/TAS6)

Bryopsida/Dicranidae Pottiales Bryoerythrophyllum inaequalifolium 27-Bin/
TAS3b,c,e
236KC812740 tasiARF/AP2
GremialesCoscinodon humilis 20-Chu/
TAS3b,c,e
234Krasnikova et al., 2011 [24]
HQ709423
—“—
C. humilis 16-Chu/
TAS3b,c,e
228Krasnikova et al., 2011 [24]
HQ709422
—“—
Schistidium elegantulum 24-Sce/
TAS3b,c,e
229Krasnikova et al., 2011 [24]
HQ709424
—“—
Grimmia cribrosa 43-Gcr/
TAS3b,c,e
228Krasnikova et al., 2011 [24]
HQ709421
—“—
DicranalesFissidens taxifolius 17-Fit/
TAS3b,c,e
192Krasnikova et al., 2011 [24]
HQ709425
—“—
Ceratodon purpureus 48-Cpu/
TAS3b,c,e
231
779e
SRR074890.1165977.2tasiARF/AP2/
TAS6
Amphidium mougeotii 56-Amo/
TAS3b,c,e
234KC812745tasiARF/AP2
Leucobryum glaucum 41-Lgl/
TAS3b,c,e
226KC812750—“—
L. glaucum 42-Lgl/
TAS3b,c,e
192KC812749—“—
Dicranum pacificum 44-Dpa/
TAS3b,c,e
232KC812741—“—

Bryopsida/Bryidae OrthotrichalesOrthotrichum pumilum 5-Opu/
TAS3b,c,e
199Krasnikova et al., 2011 [24]
HQ709419
—“—
O. pumilum 24-Opu/
TAS3a,d,f
246Krasnikova et al., 2011 [24]
HQ709420
—“—
HypnalesBrachythecium latifolium 47-Br/
TAS3b,c,e
199Krasnikova et al., 2011 [24]
FJ804748
—“—
B. latifolium 50-Br/
TAS3a,d,f
255Krasnikova et al., 2011 [24]
FJ804747
—“—
B. albicans 37-Bal/
TAS3b,c,e
199Krasnikova et al., 2011 [24]
HQ709414
—“—
B. rivulare 11-Brar/
TAS3b,c,e
199KC812739—“—
B. rivulare 36-Brar/
TAS3a,d,f
255
1444e
KC812738
(Illumina sequence)
tasiARF/AP2/
TAS6
Homalothecium philippeanum 7-Hp/
TAS3b,c,e
199Krasnikova et al., 2011 [24]
HQ709415
tasiARF/AP2
Amblystegium sp 52-Ambly/
TAS3b,c,e
191KC812762—“—
Oxyrrhynchium hians 25-Oxy/
TAS3b,c,e
199Krasnikova et al., 2011 [24]
HQ709418
—“—
O. hians 32-Oxy/
TAS3a,d,f
253KC812761—“—
Pylaisia polyantha 10-Pyp/
TAS3b,c,e
199Krasnikova et al., 2011 [24]
HQ709416
—“—
P. polyantha 11-Pyp/
TAS3a,d,f
253 Krasnikova et al., 2011 [24]
HQ709417
—“—
HookerialesHookeria lucens 49-H/
TAS3b,c,e
190Krasnikova et al., 2011 [24]
FJ804749
—“—
BryalesPohlia nutans Pnu-30698
TAS3a,d,f
259
920e
GACA01023180.1tasiARF/AP2/
TAS6
Plagiomnium medium 41-Pme/
TAS3a,d,f
236KC812756tasiARF/AP2
Ptychostomum pseudotriquetrum 72-Pps/
TAS3a,d,f
246KC812758—“—
P. pseudotriquetrum 16-Pps/
TAS3b,c,e
193KC812757—“—
Bryum argenteum 9-Bar/
TAS3a,d,f
233KC812760—“—
B. argenteum 4-Bar/
TAS3b,c,e
192KC812759—“—
BartramialesBartramia halleriana 32-Bha/
TAS3b,c,e
228KC812748—“—
B. halleriana 28-Bha/
TAS3a,d,f
272KC812747—“—
B. halleriana 29-Bha/
TAS3a,d,f
254KC812746—“—

Bryopsida/FunariidaeEncalyptalesEncalypta rhaptocarpa 35-Erh/
TAS3a,d,f
253KC791767—“—
E. rhaptocarpa 16-Erh/
TAS3b,c,e
249KC791768 —“—
E. rhaptocarpa 31-Erh/
TAS3a,d,f
253KC791769—“—
FunarialesPhyscomitrella patens PpTAS3a/
TAS3a,d,f
255
895e
Arif et al., 2012 [20]tasiARF/AP2/
TAS6
P. patens PpTAS3d/
TAS3a,d,f
256
1250e
Arif et al., 2012 [20]—“—
P. patens PpTAS3f/
TAS3a,d,f
245
1234e
Arif et al., 2012 [20]—“—
P. patens PpTAS3c/
TAS3b,c,e
259Arif et al., 2012 [20]tasiARF/AP2
P. patens PpTAS3b/
TAS3b,c,e
192Arif et al., 2012 [20]—“—
P. patens PpTAS3e/
TAS3b,c,e
192Arif et al., 2012 [20]—“—

Bryopsida/TimmiidaeTimmialesTimmia austriaca 9-Tau/
TAS3a,d,f
254KC812755—“—

TetraphidopsidaTetraphidalesTetraphis pellucida 73-Tpe/
TAS3b,c,e
275KC812754—“—
T. pellucida 80-Tpe/
outside
251KC812753—“—

PolytrichopsidaPolytrichalesPolytrichum commune 122-Pco/
outside
227KC812751 —“—
P. commune 124-Pco/
TAS3b,c,e
262KC812752—“—

AndreaeopsidaAndreaealesAndreaea rupestris 13-Aru/
outside
254KC812744—“—
A. rupestris 14-Aru/
outside
272KC812743—“—

SphagnopsidaSphagnalesSphagnum squarrosum Not foundKrasnikova et al., 2011 [24]
S. girgensohnii Not foundKrasnikova et al., 2011 [24]

Marchantiopsida
MarchantialesMarchantia polymorpha 1-Mpo/
outside
256KC812742
SRR072168.997878.2
tasiAP2

This column includes the names of all identified TAS3 clones (upper line) and clusterization with Physcomitrella patens loci on the dendrogram (lower line).
bThis column indicates the length of all TAS3 species including both 5′ and 3′ miR390 target sequences on the borders.
cThis column includes the references and accession numbers (if known) for all identified TAS3 loci except Physcomitrella patens loci. For loci 48-Cpu and 1-Mpo, our sequence data are identical to the fragments of longer sequences found in NCBI SRA database. For 36-Brar, PCR-based sequence corresponds to the fragments of the longer Illumina reads of B. rivulare genomic DNA (Goryunov et al. unpublished).
dThis column indicates internal organization of TAS3 loci which include tasiARF and tasiAP2 sequences. TAS6 means the occurrence of the particular TAS3 locus in close proximity to TAS6 locus (if known).
eThis number indicates total length of TAS6-TAS3 complex element (from the 5′ miR529 target site in TAS6 to 3′ miR390 target site in TAS3).