Research Article

Activation Detection on fMRI Time Series Using Hidden Markov Model

Figure 2

(a) HMM log-likelihood map—2-state HMM model is applied to all voxels. The active voxels with obvious 2-state on/off patterns will have relative high likelihood given this model; (b) Gaussian log-likelihood map—“off”-state Gaussian model is applied to all voxels. The nonactive voxels with obvious 2-state on/off patterns will have relative high likelihood given this model; (c) HMM likelihood ratio test map—subtraction of HMM log-likelihood map and Gaussian log-likelihood map equivalent to general likelihood ration test, and it enhances the contrast for activation map.
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(a) HMM log-likelihood map
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(b) Gaussian log-likelihood map
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(c) HMM likelihood ratio test map