Evidence for Central Asian Origin of the p.Val27Ile Variant in the <i>GJB2</i> Gene

García Sánchez, Guille; Alfaro-Rodríguez, Alfonso; Poblano, Adrián

doi:https://doi.org/10.1155/2014/856313

International Journal of Medical Genetics

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Abstract Introduction Materials and Methods Results Discussion Conclusions Acknowledgments References Copyright Related Articles

Research Article | Open Access

Volume 2014 | Article ID 856313 | https://doi.org/10.1155/2014/856313

Evidence for Central Asian Origin of the p.Val27Ile Variant in the GJB2 Gene

Guille García Sánchez,¹Alfonso Alfaro-Rodríguez,¹and Adrián Poblano¹

Academic Editor: Nejat Akar

Received29 Aug 2014

Accepted09 Nov 2014

Published07 Dec 2014

Abstract

The mutations in the GJB2 gene are the most common cause of nonsyndromic hearing impairment and they are associated with the population’s ethnic background. The p.Val27Ile is frequent in both Asia and America. In this retrospective study, we report the findings from the GJB2 screening and the audiological exams conducted on 125 Mexican mestizo patients with non-syndromic hearing impairment; they were treated at the Instituto Nacional de Rehabilitacion in Mexico City. The most frequent audiometric findings were bilateral, symmetrical, and profound hearing impairment. The allele frequencies in the GJB2 screening were p.Val27Ile 15%, other mutations 5%, and wild type 80%. We found no correlation between GJB2 genotype and auditory phenotype. The high allele frequency of p.Val27Ile was a very interesting finding. Our research suggests that p.Val27Ile arose in an ancient common ancestor who lived in Altai Republic and then the polymorphism was brought to America by its first inhabitants, the Amerindians. These results enhance our understanding of the peopling of the America, which remains unresolved.

1. Introduction

The gap junction β2 gene (GJB2 [MIM^*121011]) (Online Mendelian Inheritance in Man (OMIM), http://www.omim.org/), encoded to the protein connexin 26. Mutations in this gene are the most common cause of hereditary nonsyndromic hearing impairment, causing up to 50% of autosomal recessive cases [1, 2] and up to 37% of unknown cause [3]. Also, although infrequently, mutations in this gene cause genetic syndromes that affect hearing and skin [4, 5].

The frequency of GJB2 variants has been associated with ethnic background. The most frequent pathogenic mutations are c.35delG (p.Gly12ValfsTer1) in Caucasian Europeans [6], c.167delT (p.Leu56ArgfsTer26) in Ashkenazi Jews [7], c.427C>T (p.R143W) in Africans from Ghana [8], c.74G>A (p.W24X) in Indians and Romanies [9, 10], c.109G>A (p.V37Ile) in East Asians [11], and c.235delC (p.L79CfsX3) in East Asians (Japanese, Koreans, and Chinese), Mongolians (Central Asia), and southern Altaians (South Siberia) [12–16]. The high carrier frequencies (0.7 to 16%) of each of these pathogenic mutations among the populations in which they are endemic suggest that there may be some evolutionary advantage to being a carrier of these mutations [17].

The most frequent polymorphic variants are c.79G>A (p.Val27Ile) and c.341G>A (p.Glu114Gly); these are most frequent in East Asian populations [12–14, 18].

The p.Val27Ile polymorphism has been reported as the most common variant of GJB2 gene in several studies [12–16, 18–25]. It occurs in the first transmembrane domain of connexin-26 and it involves the conversion of a valine codon (evolutionarily conserved), to an isoleucine codon (Val27Ile). It is considered a polymorphism because it appears with similar frequency both in people with normal hearing (PNH) and in people with hearing impairment (PHI) [15, 16, 18, 20, 23, 26].

The highest allele frequencies (AFs) of p.Val27Ile are found in the Asian populations (up to 41%) [12–16, 18, 24, 27], followed by the American populations (up to 27%), [19–23, 25, 28–31] (Table 1; Figure 1). The p.Val27Ile polymorphism seems to be rare or absent in European and African populations [26, 32].

The second most frequent polymorphism of GJB2 is p.Glu114Gly; it occurs almost exclusively in the Asian continent (in the same regions as p.Val27Ile) and its highest AFs are found in East Asia: Koreans and Chinese 17% [13, 14, 18] and Japanese 13% [12] followed by Mongolians and Altaian ethnic group 11% in Central Asia [15, 16].

The p.Val27Ile polymorphism can be found alone or together with other polymorphisms, most commonly in cis haplotype with p.Glu114Gly. In Asia, the haplotype p. (Val27Ile; p.Glu114Gly) accounts for 30–50% of the cases of p.Val27Ile and almost 100% of the cases of p.Glu114Gly [14–16, 18]. The p.Val27Ile and p.Glu114Gly polymorphisms seem to be tightly linked, and this has been proposed as haplotype tagging SNPs [18]. In America this haplotype is rare or absent [19–23, 25, 30, 31].

This research was conducted in mestizo patients, born in Mexico, a country located in North America with a population of 112 million according to the 2010 census (Instituto Nacional de Estadística y Geografía [INEGI], Mexico, 2010. Censo de Población y Vivienda 2010, http://cuentame.inegi.org.mx), of them, 93% were mestizos, (resulting from post-Columbian admixture between Amerindians, Spaniards, and Africans, principally) [33]. The origin of the nuclear DNA from current Mexican mestizo population has been estimated to be 55.3% Amerindian (Native American), 42.2% European, 3.3% African, and 1.2% East Asian (Philippines). With variations among geographic regions, in the North the highest ancestral contribution is European, while in the Central and South the highest ancestral contribution is Amerindian [34].

The main purpose of this retrospective study was to analyze the results of the allele frequency (AF) of p.Val27Ile on GJB2 screens and its possible correlation with auditory phenotype in the 125 Mexican mestizo patients with nonsyndromic hearing impairment and to propose our two hypotheses about p.Val27Ile origin: first, that p.Val27Ile arose in an Asian ancient common ancestor and second, that this Asian ancient common ancestor lived in the Altai Republic. Also, we will try to elucidate why p.Val27Ile is frequent in Asia and America and why p.Glu114Gly is almost absent in America.

2. Materials and Methods

2.1. Clinical Genetic Evaluation

The information was taken from the patients’ medical files. In this retrospective study we included 125 Mexican mestizo patients with nonsyndromic hearing impairment who were treated at the Instituto Nacional de Rehabilitación in Mexico City. We excluded patients with potentially adverse hearing factors such as premature birth, low birth-weight, perinatal asphyxia, jaundice, intrauterine infections (e.g., toxoplasmosis, other agents, rubella, cytomegalovirus, herpes simplex (TORCH)), postnatal viral and bacterial infections, and exposure to ototoxic drugs, and those patients with signs and/or symptoms that suggested syndromic hearing impairment [35, 36].

2.2. Family Data

This information was taken from the patient’s pedigree; we only included patients whose pedigree went back at least three generations and whose place of origin, as well as their four grandparents, was Mexico and the region was specified, that is, North, Central, or South. Patients with foreign ancestry were excluded.

The families with at least two affected members were considered to be multiplex or familial; the families with only one affected member were considered to be simplex or sporadic.

2.3. Audiologic Analysis

Audiometric data was extracted from copies of available pure-tone audiometries. Pure-tone averages (PTA4) were determined by calculating the mean of tested thresholds at 500, 1000, 2000, and 4000 Hertz and were used for the analysis of the degree of hearing impairment. The degree of hearing impairment was defined by the PTA4 in the better ear; 21–40 dB, mild; 41–70 dB, moderate; 71–95 dB, severe; >95 dB, profound [35].

2.4. Molecular Testing

Informed consent form was obtained from all the patients. The patient’s peripheral blood samples were drawn at the Instituto Nacional de Rehabilitación in Mexico City. The DNA testing was performed by the laboratory of Arti Pandya, M.D., Department of Human and Molecular Genetics, Virginia Commonwealth University, Richmond, Virginia, USA. DNA samples from all patients were screened for mutations in exon 1 and 2 of the GJB2 by cycle sequencing [19, 37].

2.5. Statistical Analysis

The SPSS17 statistical package was used for the analysis (SPSS Inc., Chicago, IL, USA). We analyzed the frequency and percent distribution, and we calculated the minimum and maximum and mean. Finally, we analyzed for correlation between GJB2 genotypes and the other qualitative data using the test, with a level of minimum confidence interval of 95%.

3. Results

The sampling consisted of 125 Mexican mestizo patients, of them 69 (55%) were females and 56 (45%) were males, with ages varying from 3 to 69 years old (mean 22.41 years). Eighty-seven patients (69%) came from 57 families, considered multiplex or familial, and 38 (31%) came from 38 families considered to be simplex or sporadic. All the patients and their four grandparents’ place of origin was Central or South Mexico and they did not refer any foreign ancestor. The hearing impairment findings were bilateral 96.8% (121 out of 125), unilateral 3.2% (4 out of 125), symmetrical 85.1% (97 out of 114), and asymmetrical 14.9% (7 out of 114).

The allele frequency of p.Val27Ile was 15%, both when we included all the patients and when we included only the 95 unrelated patients. The alleles found in the GJB2 screening of all the patients are shown in Table 2. The GJB2 genotypes by degree of hearing impairment are shown in Table 3. We found no correlation between GJB2 genotype and auditory phenotype (degree, unilateral-bilateral, and symmetrical-asymmetrical hearing impairment) or with any other qualitative variables (multiplex-simplex family structure and gender); in all cases we found , .

4. Discussion

It is important to mention that this is the study with the highest sampling of Mexican patients with familial nonsyndromic hearing impairment and the first study in Mexican mestizo patients, who have been screened for GJB2. The most interesting finding in this sampling was the high AF of p.Val27Ile polymorphism, being 15%, which supports the high AFs previously reported in American populations (Table 1): Ecuadorians, Mexicans (unspecified ethnicity), Mexican Americans in Southern California, and Hispanics in the United States, Brazilians from Belém Pará in the Amazon region, Colombians, Chileans, and East Greenlanders all who have AFs of 3.4–27% (Table 1) [19–23, 25, 29, 30]. The high AFs of p.Val27Ile reported in these populations (Table 1), which also have high percentages of autosomal Native American DNA 19–55% [34, 38–40] coupled with the low AFs of p.Val27Ile, ranging from 0.34 to 1% in American Caucasian populations: in the United States, Brazil (Sao Paulo), and Argentina [19, 29, 31, 41], support that in American populations p.Val27Ile is associated with their Amerindian origin, as it has been proposed in Brazil [23].

Aiming to elucidate the origin of p.Val27Ile, we propose as a first hypothesis, that p.Val27Ile arose in an Asian ancient common ancestor. Our arguments are as follows: first, p.Val27Ile seems to be associated to Amerindian origin, and the general consensus is that the Amerindians were the first inhabitants of the American continent and that they came from the Asian continent [42, 43]. Second, the geographic distribution of p.Val27Ile is practically confined to Asia: (specifically East and Central Asia and South and East Siberia) [12–16, 18, 24] and several countries of America (Table 1; Figure 1) [19–23, 25, 28, 30]. Third, p.Val27Ile shows up more frequently in Asia than in America, and this descending gradient could be due to the geographic distance [42, 44], between Asia and America; the founder serial effect from Asia to America; the genetic drift, favored by the isolation [45] of the American continent for over 10,000 years (~500 generations, with each generation of 20 years) followed by a drastic reduction in the Native American population, due mostly to epidemic diseases (bottleneck effect) during the colonization by Europe ~500 years ago and also due to post-Columbian admixture [44–48]. The second and the third arguments contradict the possibility that the high frequency of p.Val27Ile is due to multiple mutational events.

Assuming that our first hypothesis about the Asian ancient common ancestor is true, then we would like to propose a second hypothesis; this to argue that the common ancestor’s place of origin was the Altai Mountains, probably Altai Republic, inhabited ~45,000 years ago [49], and considered a region of great evolutionary importance located right in the center of Asia, in South Siberia bordering with Mongolia, China, and Kazakhstan (Official portal Altai Republic: Government: welcoming letter of the Head of the Altai Republic, http://www.eng.altai-republic.ru/modules.php?op=modload&name=Sections&file=index&req=viewarticle&artid=6&page=1). Our first argument is that Altai Republic has been proposed as the possible homeland for the ancestry of the Native Americans, which is supported by the presence of mitochondrial DNA type X both in the Altaians and the Native Americans [50, 51].

Our second argument is that in the Altaian ethnic group (Mongoloids) that lives in southern Altai Republic, p.Val27Ile has a high AF (28%), but it is absent in the Russian ethnic group (Caucasians) [16], which suggests that in Asian populations p.Val27Ile is associated to Mongoloid origin (Altaian ethnic group). Our third argument is that the high-resolution analysis of the Y chromosome haplogroup has revealed that southern Altaians and Native Americans share a common paternal ancestor, who lived in the South of Altai ~22,000 years ago (Upper Paleolithic/Last Glacial Maximum) and his descendants diverged into southern Altaians and Native Americans ~13,400 years ago, which coincides with the initial settlement of the American continent [43, 51–55]. We suspect that p.Val27Ile also arose in this common ancestor or in one of his male descendants (before the divergence into southern Altaians and Native Americans), and it was brought to America by some of the Native Americans, who must have left Altai Republic in the first migratory wave according to the Greenberg three-migration model [56], who after crossing the eastern Beringia, they arrived in Alaska [57] from there and with serial founder effect, in the millennia after, they have spread p.Val27Ile in America. In East Asia, p.Val27Ile may have dispersed through gene flow and emigrations facilitated by Altai’s shared borders with Mongolia and China, from there, p.Val27Ile could have spread to Korea and then to Japan.

Even though Korea has the highest AF in the world (41%), we do not believe it to be the place of origin for p.Val27Ile, since as far as we know Korea has had no migrations that support the current geographical distribution of p.Val27Ile.

In regards to the p.Val27Ile distribution in Central Asia, we find it interesting that Turkey has a low AF (2.3%), although it is known that the Turkish were ancient inhabitants of Central Asia, from there they migrated to Turkey ~1000 years ago. This low frequency could be due to the many ethnically distinct populations that immigrated into Turkey from the Paleolithic Era, mainly during the past 10,000 years [27, 58, 59].

To prove that p.Val27Ile comes from a common ancestor will be difficult, since we are dealing with an ancient variant. In these cases the polymorphisms, even the closer ones, could be different, even in populations with the same origin [58, 60–62]. This could be the case with p.Val27Ile and p.Glu114Gly which has been found frequently in cis haplotype and tightly linked in Asian populations [14–16, 18] while in Americans p.Glu114Gly is almost absent [19–23, 25, 28, 30, 31], which is supported by the present study (we did not find any case). We believe there are two probable reasons why p.Glu114Gly is almost absent in Americans: first, perhaps p.Glu114Gly was not brought to America by the first immigrants, because the polymorphism had not yet arisen when they left Altai or because they were not carriers of this polymorphism (founder effect). Second, p.Glu114Gly came to America, but was reversed by natural evolution, or maybe p.Glu114Gly carriers were eliminated by natural selection.

To estimate the biological age and clarify the origin of p.Val27Ile and p.Glu114Gly, it would be very useful that the researchers of population genetics screen for GJB2 in ancient human remains found in the regions where p.Val27Ile and/or p.Glu114Gly occur in the highest frequencies, including “Naia,” the most ancient (almost complete) human skeleton of America, recently discovered in Yucatán Peninsula, México [57].

If Altai Republic is confirmed as the origin place of p.Val27Ile we propose to use p.Val27Ile as tagging SNP of southern Altaian and Amerindian origins. And we propose p (Val27Ile; Glu114Gly) as haplotype tagging SNP of southern Altaian origin.

In case that p.Val27Ile have been arisen ~22,000 years ago (1,100 generations), this will be the oldest GJB2 variant, since it has been estimated that the c.35delG mutation arose 10,000–14,000 years ago [60–62], the c.235delC mutation arose 11,500 years ago [63], and the p.W24X mutation arose 7,880 years ago [10]. It is worth mentioning that these two mutations, c.35delG and c.235delC, also arose in the Upper Paleolithic, and it has been suggested that (c.235delC) could have arisen in the Lake Baikal area [58] or in the Altai-Sayan region [16, 64].

Why does p.Val27Ile have high AFs in people with normal hearing in Asia and in America? Maybe it is a selectively neutral variant, but we believe that is unlikely since there are also some facts that suggest that p.Val27Ile could give an heterozygous advantage, as happens with some autosomal recessive mutations [42, 52]. The facts are as follows: the first fact is that p.Val27Ile is a polymorphism in GJB2, a gene involved in the embrionary development of the epidermal barrier, and postnatally in its functioning [65]. The epidermis is the layer of the skin that is exposed to the environment and p.Val27Ile apparently arose in the Last Glacial Maximum (LGM), at which time there was extreme cold. For this reason, we suspect that this polymorphism could increase the individual’s resistance to the cold and environmental inhospitality by modifying the epidermal barrier, as has been reported in some autosomal, recessive, pathogenic, mutations of GJB2 (c.35delG, p.R143W and c.101T>C (p.Met34Thr)), in which it has been found that the epidermis had thickened. It has been suggested that this confers a greater resistance to trauma, bacterial infection, and insect bites [17, 66, 67]. The second fact is that c.235delC, the GJB2 mutation that most frequently causes autosomal recessive hearing impairment (MIM^*121011) in Asia has a frequency of 3.4–13.9% [12–14], far below the 35% of autosomal recessive hearing impairment caused by c35deG in southern Europe [6]; even when we are talking about two ancient mutations that could be considered contemporaneous [60–62, 64] and its carrier frequencies are remarkably similar [17]. This makes us suspect that perhaps p.Val27Ile has some protecting effect against the emergence of GJB2 pathogenic mutations in cis configuration with this polymorphism; which is supported by the very low frequency of this kind of haplotype (p.Val27Ile; pathogenic mutation) [14, 29, 59]. The third fact is that p.Val27Ile seems to be capable of compensating for the decreased activity of p.Glu114Gly in heterotypic hemichannels of GJB2 (compound by p.Val27Ile and p.Glu114Gly), as have been demonstrated by in vitro tests [67]. Further studies are needed to expand knowledge on the role of p.Val27Ile in the epidermal barrier, hearing function, and the protecting effect against the emergence of GJB2’s pathogenic mutations.

5. Conclusions

We found no correlation between GJB2 genotype and auditory phenotype. The high allele frequency of p.Val27Ile was a very interesting finding and we based on the AF of p.Val27Ile, its geographic distribution, genetics, and historical evidences supported by documents, we propose that p.Val27Ile arose in Asia in Altai Republic in an ancient common ancestor and then it was spread to East Asia and America. The polymorphism p.Val27Ile could be the oldest variant of GJB2 and may have arisen during the LGM and perhaps confers greater resistance to the cold and protects against the emergence of pathogenic mutations in GJB2. This is currently the most common GJB2 variant. It can be found alone or frequently in haplotype with p.Glu114Gly and it could be very useful as tagging SNP or haplotype tagging SNPs to identify people of Native American and southern Altaian origins. The p.Val27Ile polymorphism could help establish the genetic connection between the southern Altaians and the Native Americans; this could be of great importance for the field of population genetics in solving the place of origin of the first inhabitants of the American continent, which remains unresolved.

Limitations of this research: Native American patients were not available to us. We did not undertake biological exams to determine the function, the biological age, and the origin of p.Val27Ile. The frequency of p.Val27Ile has not been reported in studies of GJB2 conducted in most countries throughout the world. Furthermore, the vast majority of the studies do not specify the ethnicity of the population included.

Scope of this study: to make a proposal on where, when, and why p.Val27Ile arose and we invite other researchers to help confirm or reject our hypotheses.

Conflict of Interests

The authors declare no conflict of interests.

Acknowledgments

The authors would like to give their most sincere thanks to all the patients involved in this study, the scholars who kindly extended copies of their articles here to be cited, to Jennifer Martínez García for her valuable help with the bibliography, especially with the book “Genes, Pueblos, y Lenguas” (Cavalli-Sforza LL. 2010), the cornerstone of this investigation, to Professor Luigi Luca Cavalli-Sforza and Professor Francesco Cavalli-Sforza for their reading and reviewing of this paper and their valuable feedback, and finally to Isabel and Rita Greenspon for their patience and professionalism in revising, correcting, and translating this paper into English.

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Copyright © 2014 Guille García Sánchez et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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