Advances in Bioinformatics / 2009 / Article / Alg 3

Research Article

FlowFP: A Bioconductor Package for Fingerprinting Flow Cytometric Data

Algorithm 3

(Code Fragment 3).
trainSets <- list(aml=train_aml, norm=train_norm)
plex <- flowFPPlex ()     # create an empty plex
for (tube in 2:7) # loop over tubes 2–7
fs <- read_tubes (tube)      # create a flowSet
for (trainSet in trainSets)  # differential modeling
mod <- flowFPModel (fs[trainSet])# training set only
fp <- flowFP (fs, mod) # create fingerprints
plex <- append (plex, fp)# add fingerprints to plex

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