FlowFP: A Bioconductor Package for Fingerprinting Flow Cytometric Data

Algorithm 3

(Code Fragment 3).

trainSets <- list(aml=train_aml, norm=train_norm)

plex <- flowFPPlex ()                       # create an empty plex

for (tube in 2:7) {                     # loop over tubes 2–7

     fs <- read_tubes (tube)                  # create a flowSet

     for (trainSet in trainSets) {          # differential modeling

         mod <- flowFPModel (fs[trainSet]) # training set only

         fp <- flowFP (fs, mod)          # create fingerprints

         plex <- append (plex, fp)       # add fingerprints to plex

}

}