Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput “omics” Data

Table 3

NIAID biodefense proteomics resource catalog summary.

Organism	PRC	Data Type	SOPs	No. of protein in Master Protein Directory (MPD)	No. of reagents in Master Reagent Directory (MRD)	No. of proteins in Complete Predicated Proteome (CPP)
Brucella abortus	Caprion Proteomics Inc.	Mass spectrometry	23	4963	—	6070
Cryptosporidium parvum	Einstein Biodefense Proteomic Research Center	Mass spectrometry	4	609	Antibodies (68)	—
Francisella tularensis	Myriad Genetics	Protein interaction	4	62	Clone (4379)	4629
Monkeypox	Pacific Northwest National Laboratory	Mass spectrometry	2	2958	Antibodies (1)	187
SARS-CoV	Scripps Research Institute	Protein structure	5	6	Clone (7)	—
Toxoplasma gondii	Einstein Biodefense Proteomic Research Center	Mass spectrometry	5	6678	Antibodies (101)	—
Vaccinia	Myriad Genetics	Protein interaction	2	33	Clone (315)	254
	Pacific Northwest National Laboratory	Mass spectrometry	2	2973	—	—
Vibrio cholera	Harvard Institute of Proteomics	Clone	4	3731	Bacteria (627) Clone (7172)	11208
Yersinia pestis	Myriad Genetics	Protein interaction	5	75	Clone (9900)	5966
Bacillus anthracis	Harvard Institute of Proteomics	Clone	3	5342	Clone (5344)
	University of Michigan	Mass spectrometry	—	5851	Bacteria (22) ArrayChip (1)
						16686
	University of Michigan	Microarray	2	6378	—
	Myriad Genetics	Protein interaction	5	84	Clone (7884)
Salmonella typhi	Pacific Northwest National Laboratory	Mass spectrometry	—	2061	Bacteria (38)	—
Salmonella typhimurium	Pacific Northwest National Laboratory	Protein interaction	—	3	—
	Pacific Northwest National Laboratory	Mass spectrometry	12	3753	—	4532
	Pacific Northwest National Laboratory	Microarray	—	653	—