Advances in Bioinformatics / 2010 / Article / Tab 3

Review Article

Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput “omics” Data

Table 3

NIAID biodefense proteomics resource catalog summary.

OrganismPRCData TypeSOPs   No. of protein in Master Protein Directory (MPD)No. of reagents in Master Reagent Directory (MRD)No. of proteins in Complete Predicated Proteome (CPP)

Brucella abortusCaprion Proteomics Inc.Mass spectrometry2349636070
Cryptosporidium parvumEinstein Biodefense Proteomic Research CenterMass spectrometry4609Antibodies (68)
Francisella tularensisMyriad GeneticsProtein interaction462Clone (4379)4629
MonkeypoxPacific Northwest National LaboratoryMass spectrometry22958Antibodies (1)187
SARS-CoVScripps Research InstituteProtein structure56Clone (7)
Toxoplasma gondiiEinstein Biodefense Proteomic Research CenterMass spectrometry56678Antibodies (101)
VacciniaMyriad GeneticsProtein interaction233Clone (315)254
Pacific Northwest National LaboratoryMass spectrometry22973
Vibrio choleraHarvard Institute of ProteomicsClone43731Bacteria (627) Clone (7172)11208
Yersinia pestisMyriad GeneticsProtein interaction575Clone (9900)5966
Bacillus anthracisHarvard Institute of ProteomicsClone35342Clone (5344)
University of MichiganMass spectrometry5851Bacteria (22) ArrayChip (1)
University of MichiganMicroarray26378
Myriad GeneticsProtein interaction584Clone (7884)
Salmonella typhiPacific Northwest National LaboratoryMass spectrometry2061Bacteria (38)
Salmonella typhimuriumPacific Northwest National LaboratoryProtein interaction3
Pacific Northwest National LaboratoryMass spectrometry1237534532
Pacific Northwest National LaboratoryMicroarray653

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