Research Article
Designing Efficient Spaced Seeds for SOLiD Read Mapping
Table 4
Comparison of 4 different seed families on the S. cerevisiae dataset.
| Seed family | Mapped reads | Unique mapping positions | Execution time |
| PerM-F3-S20 | 768,732 (60.03%) | 694,951 (54.27%) | 0m55s | SHRiMP-default | 836,899 (65.36%) | 751,761 (58.71%) | 2m15s | 3-lossy-12 | 839,633 (65.57%) | 754,402 (58.91%) | 2m10s | 3-lossless-10-24p | 839,072 (65.53%) | 755,208 (58.98%) | 2m06s |
|
|