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Advances in Bioinformatics
Volume 2012, Article ID 893048, 5 pages
http://dx.doi.org/10.1155/2012/893048
Resource Review

BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms

1LaBRI, UMR 5800 CNRS, Université Bordeaux, 351, Cours de la Libération, 33405 Talence Cédex, France
2The Pacific Institute for the Mathematical Sciences, University of British Columbia, CNRS UMI 3069, 200-1933 West Mall Vancouver, BC, Canada V6T 1Z2
3LRI, UMR 8623 CNRS, Université Paris-Sud and INRIA Saclay, 91405 Orsay Cédex, France
4Department of Mathematics, Simon Fraser University, 8888 University drive, Burnaby, BC, Canada V5A 1S6
5Centre de Génétique Moléculaire, UPR 3404 CNRS, Avenue de la Terrasse, Bât. 26, 91198 Gif-Sur-Yvette, France
6IGM, CNRS UMR 8621, Université Paris-Sud, 91405 Orsay Cédex, France
7MAEM, CNRS UMR 7567, Université Henri Poincaré, 1 Boulevard des Aiguillettes, BP 239, 54506 Vandoeuvre-Les-Nancy Cédex, France
8LIFL, CNRS UMR 8022, Université Lille 1 and INRIA, 59655 Lille Cédex, France
9Inria Rhône-Alpes and LBBE, UMR 5558 CNRS, Université Claude Bernard, Bât. Grégor Mendel, 43 Boulevard du 11 Novembre 1918, 69622 Villeurbanne Cédex, France

Received 28 September 2011; Accepted 22 February 2012

Academic Editor: Alejandro Schäffer

Copyright © 2012 Julien Allali et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [7 citations]

The following is the list of published articles that have cited the current article.

  • Jiabin Huang, Rolf Backofen, and Bjoern Voss, “Abstract folding space analysis based on helices,” Rna-A Publication Of The Rna Society, vol. 18, no. 12, pp. 2135–2147, 2012. View at Publisher · View at Google Scholar
  • Lorentz Jäntschi, and Sorana D. Bolboacă, “Distribution on Contingency of Alignment of Two Literal Sequences Under Constrains,” Acta Biotheoretica, 2014. View at Publisher · View at Google Scholar
  • Stefanie Schirmer, Yann Ponty, and Robert Giegerich, “Introduction to RNA secondary structure comparison,” Methods in Molecular Biology, vol. 1097, pp. 247–273, 2014. View at Publisher · View at Google Scholar
  • Stefanie Schirmer, Yann Ponty, and Robert Giegerich, “Introduction to RNA secondary structure comparison,” Methods in Molecular Biology, vol. 1097, pp. 247–273, 2014. View at Publisher · View at Google Scholar
  • Alain Denise, and Philippe Rinaudo, “Optimisation Problems for Pairwise RNA Sequence and Structure Comparison: A Brief Survey,” Transactions on Computational Intelligence XIII, vol. 8342, pp. 70–82, 2014. View at Publisher · View at Google Scholar
  • Laetitia Bourgeade, Cédric Chauve, and Julien Allali, “Chaining Sequence/Structure Seeds for Computing RNA Similarity,” Journal of Computational Biology, vol. 22, no. 3, pp. 205–217, 2015. View at Publisher · View at Google Scholar
  • Jimmy Ka Ho Chiu, and Yi-Ping Phoebe Chen, “Pairwise RNA secondary structure alignment with conserved stem pattern,” Bioinformatics, vol. 31, no. 24, pp. 3914–3921, 2015. View at Publisher · View at Google Scholar