Advances in Bioinformatics / 2014 / Article / Tab 2

Research Article

Objective and Comprehensive Evaluation of Bisulfite Short Read Mapping Tools

Table 2

Improvement in mapping efficiency after using BSMAP and BS-Seeker to map unmapped reads from Bismark on human blood data.

File nameTotal number of readsUnmapped reads in BISMARKOverall improvement using BSMAPOverall improvement using BS-Seeker

SRR34255223,472,574105122693.72%0.90%
SRR34255323,749,583106103074.24%1.03%
SRR34255425,232,053112774074.29%1.07%
SRR34255523,750,428104529794.23%1.01%
SRR34255623,140,352102046034.28%1.06%
SRR34255723,089,492100937564.33%1.05%
SRR34255821,205,56492156044.26%1.04%
SRR34256026,174,056114916734.17%1.01%
SRR34256125,457,341112714004.16%1.02%