Advances in Bioinformatics / 2014 / Article / Tab 4 / Research Article
Secondary Structure Preferences of Mn2+ Binding Sites in Bacterial Proteins Table 4 Probabilities of amino acids and secondary structure elements occurrence near the glutamic acid binding Mn+2 . Significantly overrepresented amino acids and secondary structure elements are written in bold font; significantly underrepresented ones are written in italic font.
Position −5 −4 −3 −2 −1 0 +1 +2 +3 +4 +5 Secondary structure Alpha helix 0.4389 0.4369 0.4184 0.4169 0.4132 0.4239 0.4369 0.4466 0.4658 0.4784 0.4824 Helix 3/10 0.3244 0.1428 0.1397 0.1206 0.2046 0.2120 0.2941 0.3227 0.4288 0.4298 0.4209 Beta strand 0.5667 0.7125 0.7486 0.7876 0.7906 0.7422 0.6879 0.6441 0.5720 0.5235 0.4387 Random coil 0.5514 0.4260 0.4037 0.3634 0.3782 0.4596 0.5024 0.5168 0.5190 0.5276 0.5635 Amino acid residues Gly 0.5211 0.6336 0.4237 0.5153 0.4063 0.5083 0.5928 0.5402 0.5435 0.4032 Ala 0.3723 0.4991 0.5324 0.5452 0.4904 0.5185 0.5102 0.5357 0.3980 0.3706 Arg 0.5484 0.3906 0.1075 0.6085 0.1092 0.4305 0.5382 0.1652 0.6204 0.4530 Pro 0.2502 0.5342 0.5540 0.1581 0.1908 0.5971 0.3686 0.5569 0.1365 0.5218 Asp 0.5290 0.4307 0.3942 0.6160 0.5934 0.3986 0.6196 0.3634 0.5335 0.5604 Glu 0.4256 0.4299 0.3910 0.3654 0.5080 0.4157 0.3132 0.4221 0.4578 0.5145 Ser 0.4331 0.4726 0.3015 0.3992 0.5043 0.5340 0.4678 0.5944 0.5238 0.1456 Thr 0.4928 0.6066 0.5354 0.5818 0.5080 0.5094 0.4405 0.4055 0.6249 0.6619 His 0.6939 0.2517 0.5485 0.6433 0.5667 0.6924 0.6965 0.8356 0.5716 0.6361 Gln 0.3413 0.2860 0.3184 0.5547 0.3351 0.4316 0.4573 0.3449 0.4392 0.6356 Leu 0.4900 0.3047 0.5152 0.4727 0.6081 0.4881 0.3579 0.4890 0.4532 0.3911 Val 0.4343 0.5487 0.6632 0.3459 0.5596 0.6440 0.2802 0.4865 0.5228 0.4701 Cys 0.0000 0.0000 0.7130 0.4774 0.7331 0.0000 0.6770 0.5011 0.4911 0.4146 Trp 0.7566 0.7077 0.3942 0.0000 0.0000 0.8008 0.0000 0.4296 0.0000 0.5235 Phe 0.6538 0.6079 0.7460 0.6494 0.6041 0.3868 0.5892 0.5105 0.5135 0.5668 Tyr 0.5313 0.5891 0.4059 0.3326 0.4239 0.4810 0.3842 0.6738 0.5359 0.5808 Met 0.7144 0.4412 0.2897 0.6551 0.6262 0.4713 0.4759 0.5786 0.6281 0.6272 Ile 0.5946 0.6594 0.5899 0.4762 0.6830 0.4488 0.5580 0.5384 0.5150 0.5065 Asn 0.1730 0.5097 0.6126 0.4046 0.3917 0.4976 0.6646 0.4686 0.4375 0.6089 Lys 0.3916 0.3233 0.3320 0.3510 0.2028 0.1066 0.5681 0.2369 0.4770 0.4492