Research Article
A Parallel Framework for Multipoint Spiral Search in ab Initio Protein Structure Prediction
Table 2
The
BM energy model by Berrera et al. [
25].
| Cys | −3.477 | | | | | | | | | | | | | | | | | | | |
| Met | −2.24 | −1.901 | | | | | | | | | | | | | | | | | | | Phe | −2.424 | −2.304 | −2.467 | | | | | | | | | | | | | | | | | | Ile | −2.41 | −2.286 | −2.53 | −2.691 | | | | | | | | | | | | | | | | | Leu | −2.343 | −2.208 | −2.491 | −2.647 | −2.501 | | | | | | | | | | | | | | | | Val | −2.258 | −2.079 | −2.391 | −2.568 | −2.447 | −2.385 | | | | | | | | | | | | | | | Trp | −2.08 | −2.09 | −2.286 | −2.303 | −2.222 | −2.097 | −1.867 | | | | | | | | | | | | | | Tyr | −1.892 | −1.834 | −1.963 | −1.998 | −1.919 | −1.79 | −1.834 | −1.335 | | | | | | | | | | | | | Ala | −1.7 | −1.517 | −1.75 | −1.872 | −1.728 | −1.731 | −1.565 | −1.318 | −1.119 | | | | | | | | | | | | Gly | −1.101 | −0.897 | −1.034 | −0.885 | −0.767 | −0.756 | −1.142 | −0.818 | −0.29 | 0.219 | | | | | | | | | | |
| Thr | −1.243 | −0.999 | −1.237 | −1.36 | −1.202 | −1.24 | −1.077 | −0.892 | −0.717 | −0.311 | −0.617 | | | | | | | | | | Ser | −1.306 | −0.893 | −1.178 | −1.037 | −0.959 | −0.933 | −1.145 | −0.859 | −0.607 | −0.261 | −0.548 | −0.519 | | | | | | | | | Gln | −0.835 | −0.72 | −0.807 | −0.778 | −0.729 | −0.642 | −0.997 | −0.687 | −0.323 | 0.033 | −0.342 | −0.26 | 0.054 | | | | | | | | Asn | −0.788 | −0.658 | −0.79 | −0.669 | −0.524 | −0.673 | −0.884 | −0.67 | −0.371 | −0.23 | −0.463 | −0.423 | −0.253 | −0.367 | | | | | | | Glu | −0.179 | −0.209 | −0.419 | −0.439 | −0.366 | −0.335 | −0.624 | −0.453 | −0.039 | 0.443 | −0.192 | −0.161 | 0.179 | 0.16 | 0.933 | | | | | | Asp | −0.616 | −0.409 | −0.482 | −0.402 | −0.291 | −0.298 | −0.613 | −0.631 | −0.235 | −0.097 | −0.382 | −0.521 | 0.022 | −0.344 | 0.634 | 0.179 | | | | | His | −1.499 | −1.252 | −1.33 | −1.234 | −1.176 | −1.118 | −1.383 | −1.222 | −0.646 | −0.325 | −0.72 | −0.639 | −0.29 | −0.455 | −0.324 | −0.664 | −1.078 | | | | Arg | −0.771 | −0.611 | −0.805 | −0.854 | −0.758 | −0.664 | −0.912 | −0.745 | −0.327 | −0.05 | −0.247 | −0.264 | −0.042 | −0.114 | −0.374 | −0.584 | −0.307 | 0.2 | | | Lys | −0.112 | −0.146 | −0.27 | −0.253 | −0.222 | −0.2 | −0.391 | −0.349 | 0.196 | 0.589 | 0.155 | 0.223 | 0.334 | 0.271 | −0.057 | −0.176 | 0.388 | 0.815 | 1.339 | |
| Pro | −1.196 | −0.788 | −1.076 | −0.991 | −0.771 | −0.886 | −1.278 | −1.067 | −0.374 | −0.042 | −0.222 | −0.199 | −0.035 | −0.018 | 0.257 | 0.189 | −0.346 | −0.023 | 0.661 | 0.129 |
| | Cys | Met | Phe | Ile | Leu | Val | Trp | Tyr | Ala | Gly | Thr | Ser | Gln | Asn | Glu | Asp | His | Arg | Lys | Pro |
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