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Archaea
Volume 2012 (2012), Article ID 832097, 9 pages
http://dx.doi.org/10.1155/2012/832097
Research Article

Novel Cardiolipins from Uncultured Methane-Metabolizing Archaea

Organic Geochemistry Group, MARUM—Center for Marine Environmental Sciences & Department of Geosciences, University of Bremen, 28359 Bremen, Germany

Received 23 December 2011; Accepted 28 February 2012

Academic Editor: Angela Corcelli

Copyright © 2012 Marcos Y. Yoshinaga et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. C. R. Woese, O. Kandler, and M. L. Wheelis, “Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya,” Proceedings of the National Academy of Sciences of the United States of America, vol. 87, no. 12, pp. 4576–4579, 1990. View at Publisher · View at Google Scholar · View at Scopus
  2. M. Kates, “Membrane lipids of Archaea,” in The Biochemistry of Archaea (Archaebacteria), M. Kates, D. J. Kushner, and A. T. Matheson, Eds., pp. 261–295, Elsevier, Amsterdam, The Netherlands, 1995. View at Google Scholar
  3. Y. Koga, M. Nishihara, H. Morii, and M. Akagawa-Matsushita, “Ether polar lipids of methanogenic bacteria: structures, comparative aspects, and biosyntheses,” Microbiological Reviews, vol. 57, no. 1, pp. 164–182, 1993. View at Google Scholar · View at Scopus
  4. W. Dowhan, “Molecular basis for membrane phospholipid diversity: why are there so many lipids?” Annual Review of Biochemistry, vol. 66, pp. 199–232, 1997. View at Publisher · View at Google Scholar · View at Scopus
  5. M. Schlame, D. Rua, and M. L. Greenberg, “The biosynthesis and functional role of cardiolipin,” Progress in Lipid Research, vol. 39, no. 3, pp. 257–288, 2000. View at Publisher · View at Google Scholar · View at Scopus
  6. F. L. Hoch, “Cardiolipins and biomembrane function,” Biochimica et Biophysica Acta, vol. 1113, no. 1, pp. 71–133, 1992. View at Publisher · View at Google Scholar · View at Scopus
  7. M. Schlame, “Cardiolipin synthesis for the assembly of bacterial and mitochondrial membranes,” Journal of Lipid Research, vol. 49, no. 8, pp. 1607–1620, 2008. View at Publisher · View at Google Scholar · View at Scopus
  8. M. Zhou, N. Morgner, N. P. Barrera et al., “Mass spectrometry of intact V-type ATPases reveals bound lipids and the effects of nucleotide binding,” Science, vol. 334, pp. 380–385, 2011. View at Google Scholar
  9. A. Corcelli, M. Colella, G. Mascolo, F. P. Fanizzi, and M. Kates, “A novel glycolipid and phospholipid in the purple membrane,” Biochemistry, vol. 39, no. 12, pp. 3318–3326, 2000. View at Publisher · View at Google Scholar · View at Scopus
  10. V. M. T. Lattanzio, A. Corcelli, G. Mascolo, and A. Oren, “Presence of two novel cardiolipins in the halophilic archaeal community in the crystallizer brines from the salterns of Margherita di Savoia (Italy) and Eilat (Israel),” Extremophiles, vol. 6, no. 6, pp. 437–444, 2002. View at Publisher · View at Google Scholar · View at Scopus
  11. G. D. Sprott, S. Larocque, N. Cadotte, C. J. Dicaire, M. McGee, and J. R. Brisson, “Novel polar lipids of halophilic eubacterium Planococcus H8 and archaeon Haloferax volcanii,” Biochimica et Biophysica Acta, vol. 1633, no. 3, pp. 179–188, 2003. View at Publisher · View at Google Scholar · View at Scopus
  12. P. Lopalco, S. Lobasso, F. Babudri, and A. Corcelli, “Osmotic shock stimulates de novo synthesis of two cardiolipins in an extreme halophilic archaeon,” Journal of Lipid Research, vol. 45, no. 1, pp. 194–201, 2004. View at Publisher · View at Google Scholar · View at Scopus
  13. S. Lobasso, P. Lopalco, V. M. T. Lattanzio, and A. Corcelli, “Osmotic shock induces the presence of glycocardiolipin in the purple membrane of Halobacterium salinarum,” Journal of Lipid Research, vol. 44, no. 11, pp. 2120–2126, 2003. View at Publisher · View at Google Scholar · View at Scopus
  14. A. Corcelli, S. Lobasso, L. L. Palese, M. S. Saponetti, and S. Papa, “Cardiolipin is associated with the terminal oxidase of an extremely halophilic archaeon,” Biochemical and Biophysical Research Communications, vol. 354, no. 3, pp. 795–801, 2007. View at Publisher · View at Google Scholar · View at Scopus
  15. K. U. Hinrichs, J. M. Hayes, S. P. Sylva, P. G. Brewert, and E. F. DeLong, “Methane-consuming archaebacteria in marine sediments,” Nature, vol. 398, no. 6730, pp. 802–805, 1999. View at Publisher · View at Google Scholar · View at Scopus
  16. A. Boetius, K. Ravenschlag, C. J. Schubert et al., “A marine microbial consortium apparently mediating anaerobic oxidation methane,” Nature, vol. 407, no. 6804, pp. 623–626, 2000. View at Publisher · View at Google Scholar · View at Scopus
  17. K.-U. Hinrichs and A. Boetius, “The anaerobic oxidation of methane: new insights in microbial ecology and biogeochemistry,” in Ocean Margin Systems, G. Wefer, D. Billett, D. Hebbeln, B. B. Jørgensen, M. Schlüter, and T. Van Weering, Eds., pp. 457–477, Springer, Berlin, Germany, 2002. View at Google Scholar
  18. P. E. Rossel, J. S. Lipp, H. F. Fredricks et al., “Intact polar lipids of anaerobic methanotrophic archaea and associated bacteria,” Organic Geochemistry, vol. 39, no. 8, pp. 992–999, 2008. View at Publisher · View at Google Scholar · View at Scopus
  19. P. E. Rossel, M. Elvert, A. Ramette, A. Boetius, and K. U. Hinrichs, “Factors controlling the distribution of anaerobic methanotrophic communities in marine environments: evidence from intact polar membrane lipids,” Geochimica et Cosmochimica Acta, vol. 75, no. 1, pp. 164–184, 2011. View at Publisher · View at Google Scholar · View at Scopus
  20. M. Y. Yoshinaga, M. Y. Kellermann, P. E. Rossel, F. Schubotz, J. S. Lipp, and K.-U. Hinrichs, “Systematic fragmentation patterns of intact archaeal lipids by high-performance liquid chromatography/electrospray mass spectrometry,” Rapid Communications in Mass Spectrometry, vol. 25, pp. 3563–3574, 2012. View at Google Scholar
  21. G. Bohrmann and Cruise participants, Report and Preliminary Results of R/V Meteor Cruise M74/3, Berichte, Fachbereich Geowissenschaften, Universität Bremen, Bremen, Germany, 2008.
  22. D. Fischer, H. Sahling, K. Nöthen, G. Bohrmann, M. Zabel, and S. Kasten, “Interaction between hydrocarbon seepage, chemosynthetic communities and bottom water redox at cold seeps of the Makran accretionary prism: insights from habitat-specific pore water sampling and modeling,” Biogeosciences Discussions, vol. 8, pp. 9763–9811, 2011. View at Publisher · View at Google Scholar
  23. M. Römer, H. Sahling, T. Pape, G. Bohrmann, and V. Spiess, “Gas bubble emission from submarine hydrocarbon seeps at the Makran continental margin (offshore Pakistan),” Journal of Geophysical Research. under review.
  24. H. F. Sturt, R. E. Summons, K. Smith, M. Elvert, and K. U. Hinrichs, “Intact polar membrane lipids in prokaryotes and sediments deciphered by high-performance liquid chromatography/electrospray ionization multistage mass spectrometry—new biomarkers for biogeochemistry and microbial ecology,” Rapid Communications in Mass Spectrometry, vol. 18, no. 6, pp. 617–628, 2004. View at Google Scholar · View at Scopus
  25. Y. S. Lin, J. S. Lipp, M. Y. Yoshinaga, S. H. Lin, M. Elvert, and K. U. Hinrichs, “Intramolecular stable carbon isotopic analysis of archaeal glycosyl tetraether lipids,” Rapid Communications in Mass Spectrometry, vol. 24, no. 19, pp. 2817–2826, 2010. View at Publisher · View at Google Scholar · View at Scopus
  26. F. Schubotz, J. S. Lipp, M. Elvert, and K. U. Hinrichs, “Stable carbon isotopic compositions of intact polar lipids reveal complex carbon flow patterns among hydrocarbon degrading microbial communities at the Chapopote asphalt volcano,” Geochimica et Cosmochimica Acta, vol. 75, no. 16, pp. 4399–4415, 2011. View at Publisher · View at Google Scholar · View at Scopus
  27. W. Fischer, “The polar lipids of group B Streptococci. I. Glucosylated diphosphatidylglycerol, a novel glycophospholipid,” Biochimica et Biophysica Acta, vol. 487, no. 1, pp. 74–88, 1977. View at Google Scholar · View at Scopus
  28. W. Fischer and D. Arneth-Seifert, “D-alanylcardiolipin, a major component of the unique lipid pattern of Vagococcus fluvialis,” Journal of Bacteriology, vol. 180, no. 11, pp. 2950–2957, 1998. View at Google Scholar · View at Scopus
  29. W. Fischer and K. Leopold, “Polar lipids of four listeria species containing L-lysylcardiolipin, a novel lipid structure, and other unique phospholipids,” International Journal of Systematic Bacteriology, vol. 49, no. 2, pp. 653–662, 1999. View at Google Scholar · View at Scopus
  30. Y. Koga and H. Morii, “Biosynthesis of ether-type polar lipids in archaea and evolutionary considerations,” Microbiology and Molecular Biology Reviews, vol. 71, no. 1, pp. 97–120, 2007. View at Publisher · View at Google Scholar · View at Scopus
  31. I. Gonthier, M. N. Rager, P. Metzger, J. Guezennec, and C. Largeau, “A di-O-dihydrogeranylgeranyl glycerol from Thermococcus S 557, a novel ether lipid, and likely intermediate in the biosynthesis of diethers in Archæa,” Tetrahedron Letters, vol. 42, no. 15, pp. 2795–2797, 2001. View at Publisher · View at Google Scholar · View at Scopus
  32. M. Nishihara, H. Morii, K. Matsuno, M. Ohga, K. O. Stetter, and Y. Koga, “Structural analysis by reductive cleavage with LiAlH4 of an allyl ether choline-phospholipid, archaetidylcholine, from the hyperthermophilic methanoarchaeon Methanopyrus kandleri,” Archaea, vol. 1, no. 2, pp. 123–131, 2002. View at Google Scholar · View at Scopus
  33. D. S. Nichols, M. R. Miller, N. W. Davies, A. Goodchild, M. Raftery, and R. Cavicchioli, “Cold adaptation in the Antarctic archaeon Methanococcoides burtonii involves membrane lipid unsaturation,” Journal of Bacteriology, vol. 186, no. 24, pp. 8508–8515, 2004. View at Publisher · View at Google Scholar · View at Scopus
  34. J. A. E. Gibson, M. R. Miller, N. W. Davies, G. P. Neill, D. S. Nichols, and J. K. Volkman, “Unsaturated diether lipids in the psychrotrophic archaeon Halorubrum lacusprofundi,” Systematic and Applied Microbiology, vol. 28, no. 1, pp. 19–26, 2005. View at Publisher · View at Google Scholar · View at Scopus
  35. Y. Koga and H. Morii, “Recent advances in structural research on ether lipids from archaea including comparative and physiological aspects,” Bioscience, Biotechnology and Biochemistry, vol. 69, no. 11, pp. 2019–2034, 2005. View at Publisher · View at Google Scholar · View at Scopus
  36. K. Yamauchi, K. Doi, Y. Yoshida, and M. Kinoshita, “Archaebacterial lipids: highly proton-impermeable membranes from 1,2-diphytanyl-sn-glycero-3-phosphocholine,” Biochimica et Biophysica Acta, vol. 1146, no. 2, pp. 178–182, 1993. View at Publisher · View at Google Scholar · View at Scopus
  37. T. Stiehl, J. Rullkötter, and A. Nissenbaum, “Molecular and isotopic characterization of lipids in cultured halophilic microorganisms from the Dead Sea and comparison with the sediment record of this hypersaline lake,” Organic Geochemistry, vol. 36, no. 9, pp. 1242–1251, 2005. View at Publisher · View at Google Scholar · View at Scopus
  38. A. Corcelli, “The cardiolipin analogues of Archaea,” Biochimica et Biophysica Acta, vol. 1788, no. 10, pp. 2101–2106, 2009. View at Publisher · View at Google Scholar · View at Scopus
  39. H. Niemann and M. Elvert, “Diagnostic lipid biomarker and stable carbon isotope signatures of microbial communities mediating the anaerobic oxidation of methane with sulphate,” Organic Geochemistry, vol. 39, no. 12, pp. 1668–1677, 2008. View at Publisher · View at Google Scholar · View at Scopus
  40. M. Schlame, M. Ren, Y. Xu, M. L. Greenberg, and I. Haller, “Molecular symmetry in mitochondrial cardiolipins,” Chemistry and Physics of Lipids, vol. 138, no. 1-2, pp. 38–49, 2005. View at Publisher · View at Google Scholar · View at Scopus
  41. T. M. Hoehler, M. J. Alperin, D. B. Albert, and C. S. Martens, “Field and laboratory studies of methane oxidation in an anoxic marine sediment: evidence for a methanogen-sulfate reducer consortium,” Global Biogeochemical Cycles, vol. 8, no. 4, pp. 451–463, 1994. View at Google Scholar · View at Scopus
  42. V. J. Orphan, C. H. House, K. U. Hinrichs, K. D. McKeegan, and E. F. DeLong, “Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments,” Proceedings of the National Academy of Sciences of the United States of America, vol. 99, no. 11, pp. 7663–7668, 2002. View at Publisher · View at Google Scholar · View at Scopus
  43. K. Knittel, T. Lösekann, A. Boetius, R. Kort, and R. Amann, “Diversity and distribution of methanotrophic archaea at cold seeps,” Applied and Environmental Microbiology, vol. 71, no. 1, pp. 467–479, 2005. View at Publisher · View at Google Scholar · View at Scopus
  44. K. Knittel and A. Boetius, “Anaerobic oxidation of methane: progress with an unknown process,” Annual Review of Microbiology, vol. 63, pp. 311–334, 2009. View at Publisher · View at Google Scholar · View at Scopus