Advances in Virology

Research Article

Appearance of L90I and N205S Mutations in Effector Domain of NS1 Gene of pdm (09) H1N1 Virus from India during 2009–2013

Table 3

NS1 protein positions with variable amino acids in study samples (2009–2013) with reference to A/California/07/2009 reference strain for pandemic H1N1 2009. Reference strain sequence is highlighted with bold font and study samples were arranged according to year of collection and separated with horizontal line.
 53556273909496108111123129131143145147151172202205209
A/California/07/2009 (reference)DEKSLTERIIVKTILTEANN
A/Karnataka/001/2009N······K·V··N······D
A/Kerala/002/2009·····A···V······K···
A/Bihar/003/2009····················
A/West Bengal/004/2009·······K·V··········
A/Uttar Pradesh/005/2009····················
A/Goa/006/2009·········V··········
A/Punjab/007/2009·····A···V······K···
A/Gujarat/008/2009·········V··········
A/Rajasthan/009/2009N······K·V··N······D
A/Chhattisgarh/010/2009·········V··········
A/Madhya Pradesh/011/2009·········V··········
A/Tamil Naidu/012/2009·········V··········
A/Jammu Kashmir/013/2009·········VA·········
A/Uttarakhand/014/2009·Q·····K·V··········
A/Haryana/015/2009·········V··········
A/Delhi/016/2009·Q·······V··········
A/Delhi/017/2009·Q·······V··········
A/Delhi/018/2009·········V··········
A/Rajasthan/019/2010·········V···V······
A/Assam/020/2010·········V···V······
A/Jammu Kashmir/021/2010······K··V···L······
A/Jammu Kashmir/022/2010·Q····K··V···V······
A/Kerala/023/2010·········V···V······
A/Madhya Pradesh/024/2010·········V···V······
A/Chhattisgarh/025/2010·Q·······V··········
A/Chhattisgarh/026/2010·Q·······V··········
A/Goa/027/2010·Q·······V··········
A/Haryana/028/2010·Q·······V··········
A/Haryana/029/2010·Q·······V··········
A/Punjab/030/2010·Q·······V··········
A/Punjab/031/2010·Q·······V··········
A/Uttar Pradesh/032/2010·Q·······V··········
A/Uttarakhand/033/2010·Q·······V··········
A/Goa/034/2010·Q·······V··········
A/Goa/035/2010·Q·······V··········
A/Delhi/036/2010·Q·······V··········
A/Delhi/037/2010·Q·······V··········
A/Delhi/038/2010·QR············P···D
A/Delhi/039/2010·Q·T·····V··········
A/Punjab/040/2011·········VI···R···S·
A/Punjab/041/2011·········VI·······S·
A/Punjab/042/2011·Q·T·····V··········
A/Punjab/043/2011·Q·······VA·········
A/Jammu Kashmir/044/2011·Q·T·····V··········
A/Jammu Kashmir/045/2011·········VI·······S·
A/Goa/046/2011·Q·T·····V··········
A/Goa/047/2011·Q·······VI·······S·
A/Goa/048/2011·QR······VL·······S·
A/Haryana/049/2011····I····V···V····S·
A/Delhi/050/2011····I····V········S·
A/Delhi/051/2011····I···TV········S·
A/Delhi/052/2011····I···TV········S·
A/Delhi/053/2011····I···TV········S·
A/Delhi/054/2011····I···TVL·······S·
A/Delhi/055/2011····I····V········S·
A/Delhi/056/2011····I····V········S·
A/Delhi/057/2012····I····V········S·
A/Delhi/058/2012····I····V········S·
A/Delhi/059/2012····I····V········S·
A/Delhi/060/2012····I····V········S·
A/Delhi/061/2012····I····V········S·
A/Delhi/062/2012····I····V········S·
A/Delhi/063/2012····I····V········S·
A/Delhi/064/2012····I····V········S·
A/Delhi/065/2012····I····V········S·
A/Delhi/066/2012····I····V········S·
A/Delhi/067/2012····I····V········S·
A/Delhi/068/2012····I····V········S·
A/Delhi/069/2012····I····V········S·
A/Uttarakhand/070/2012····I····V········S·
A/Goa/071/2012····I····V········S·
A/Goa/072/2012····I····V········S·
A/Goa/073/2012····I····V········S·
A/Chhattisgarh/074/2012····I····V········S·
A/Chhattisgarh/075/2012····I····V········S·
A/Haryana/076/2012····I····V········S·
A/Haryana/077/2012····I····V·Q······S·
A/Haryana/078/2012····I····V·Q······S·
A/Haryana/079/2013·Q··I····V········S·
A/Haryana/080/2013·K··I····V·E······S·
A/Haryana/081/2013····I····V·E······S·
A/Uttarakhand/082/2013····I····V·E······S·
A/Uttarakhand/083/2013····I····V·E······S·
A/Jammu Kashmir/084/2013····I····V·······PS·
A/Jammu Kashmir/085/2013····I····V········S·
A/Delhi/086/2013····I····V········S·
A/Delhi/087/2013····I····V········S·
A/Delhi/088/2013····I····V········S·
A/Delhi/089/2013····I····V········S·
A/Uttar Pradesh/090/2013····I····V········S·
A/Uttar Pradesh/091/2013····I····V········S·