A Scaffold Analysis Tool Using Mate-Pair Information in Genome Sequencing

Table 3

Number of reported errors in scaffold construction for 5 dataset.

Data name	𝑙
	Errors^*	1	2	3	4
MH1	Self Collision	0	0	0	0
	Gap size	3	3	3	0
	Overlap	22	2	0	2
MH2	Self collision	2	2	2	2
	Gap size	2	2	2	2
	Overlap	20	2	2	0
MH3	Self collision	0	0	0	0
	Gap size	5	0	0	0
	Overlap	18	0	0	0
MH4	Self collision	0	0	0	0
	Gap size	0	0	0	0
	Overlap	0	0	0	0
VV	Self collision	16	16	10	7
	Gap size	65	7	3	2
	Overlap	85	24	0	4

^* Mate-pair size errors were excluded because these errors do not depend on 𝑙.