Other computational and experimental approaches capable of performing more reliable analysis by combining miRNA and mRNA expression data.
|Reference||Brief description||Computer platform|
|Kort et al. ||Two signatures of differentially expressed mRNAs and microRNAs are used to cluster the data. Qualitative combination of mRNA and microRNA expression data.||Any platform, web browser, R language|
|Lanza et al. ||One signature of differentially expressed mRNAs and microRNAs in combination is used to correctly cluster the data. Qualitative combination of mRNA and microRNA expression data.||Any platform, GeneSpring software|
|Salter et al. ||Qualitative combining of mRNA profiling and microRNA expression, by clustering separately the data and analyzing differentially modulated pathways.||Any platform, GeneSpring software, R Language, GenePattern software|
|Nicolas et al. ||Experimental identification of real microRNA targets by overexpression or silencing of miR-140.||Any platform, web browser|
|Sood et al. ||A computational tool to directly correlate 3'UTR motifs with changes in mRNA levels upon miRNA overexpression or knockdown.||Linux, Cygwin (Windows), Mac OS X, SunOS platform. A web version is also available|