BioMed Research International / 2009 / Article / Tab 3

Research Article

Comparability of Microarray Data between Amplified and Non Amplified RNA in Colorectal Carcinoma

Table 3

Comparison of mean signals and standard deviation (sdv) of genes which were recently described as predictive for lymphatic metastasis in colorectal carcinomas [12], between 31 amplified RNA samples of colon carcinomas and 24 RNA samples of colon carcinomas not amplified prior to microarray hybridization.

GroupColon carcinomaColon carcinoma
Samples; n3124
Stage UICCIIIIII
Amplifiedyesno

ProbeSet ID gb Gene Basesfold change log2 mean amplified versus non amplifiedlog2 meanlog2 sdevlog2 meanlog2 sdev

205433_atNM_000055BCHE645621.054.360.714.160.21
211044_atBC006333TRIM1449,9260.83.370.184.220.24
37547_atU85995PTHB1476,5291.325.630.614.250.17
215973_atAF036973HCG4P610600.894.070.364.560.21
214376_atAI263044EST3630.994.530.364.550.14
216489_atAB046836TRPM3911,8720.753.460.164.620.2
211201_atM95489FSHR192,2370.763.550.214.650.16
214068_atAF070610BEAN56,1300.743.450.414.660.21
216063_atN55205HBBP117420.793.750.214.720.24
219791_s_atNM_024748FLJ1153911,3730.773.670.434.770.2
209353_s_atBC001205SIN3B50,9470.924.370.234.770.29
211381_x_atAF168617SPAG1115,9170.763.630.224.780.35
207021_atNM_007009ZPBP155,7880.743.570.24.850.17
220227_atNM_024883CDH4684,7430.743.770.195.120.38
210701_atD85939CFDP1139,78015.120.425.120.22
220156_atNM_024593EFCAB111,8250.764.040.175.320.28
209883_atAF288389GLT25D2101,8980.894.670.775.250.19
207031_atNM_001189BAPX136611.045.540.675.320.29
206885_x_atNM_022559GH116360.764.140.275.470.25
212963_atBF968960TM2D144,3790.834.60.415.550.27
207897_atNM_001883CRHR246,8570.814.590.165.670.32
222083_atAW024233GLYAT23,2180.643.690.215.720.37
214149_s_atAI252582ATP6V0E51,1380.865.070.495.870.58
220332_atNM_006580CLDN1622,4930.824.710.255.750.21
220944_atNM_020393PGLYRP418,7210.784.570.275.840.52
219170_atNM_024333FSD119,1710.915.350.245.90.36
221113_s_atNM_016087WNT1615,7381.036.150.175.950.28
221431_s_atNM_030959OR12D39480.684.080.236.030.31
207936_x_atNM_006604RFPL362770.643.960.366.160.47
204303_s_atNM_014772KIAA0427324,1580.996.010.316.090.17
210272_atM29873CYP2B7P126,3940.744.690.236.350.38
207984_s_atNM_005374MPP232,3870.644.070.256.360.26
208227_x_atNM_021721ADAM22262,7530.694.550.316.560.35
213847_atNM_006262PRPH49970.845.630.336.710.42
215544_s_atAL121891UBOX514,3200.855.830.236.850.31
336_atD38081TBXA2R12,1550.745.030.246.840.28
209402_s_atAF047338SLC12A424,29616.970.2670.25
221629_x_atAF151022LOC5123629480.836.040.587.290.5
219071_x_atNM_016458C8orf30A29481.038.120.717.920.52
56829_atH61826NIBP726,0910.826.830.278.290.3
205835_s_atAW975818YTHDC281,5720.94.110.174.590.19
213254_atN64803TNRC6B290,9920.936.150.236.650.38
34764_atD21851LARS2160,2611.017.130.637.040.51
209711_atN80922SLC35D150,4021.3210.20.527.730.45
203073_atNM_007357COG251,49118.110.518.070.3
209174_s_atBC000978FLJ2025964,3631.078.710.328.170.25
221884_atBE466525EVI164,2361.2510.560.668.460.46
218160_atNM_014222NDUFA815,7621.2211.30.389.240.47
201386_s_atAF279891DHX1557,0981.0810.440.669.640.52
202753_atNM_014814PSMD613,2811.1411.460.4410.030.46

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