Microarray Detection Call Methodology as a Means to Identify and Compare Transcripts Expressed within Syncytial Cells from Soybean (Glycine max) Roots Undergoing Resistant and Susceptible Reactions to the Soybean Cyst Nematode (Heterodera glycines)
Table 1
Select genes that were unique to the 3 dpi syncytia undergoing an incompatible reaction but that were not differentially expressed as compared to a pericycle control sample (Figure 8(b)) comprising the Disease and Defense, Signaling, and Transcription categories.
I-3 dpi
Probe set ID
Public ID
Avg -value
Gene
Disease & defense
Gma.4886.2.S1_at
AW234624
0.005201937
haem peroxidase
GmaAffx.69994.1.S1_at
CD417025
0.017952293
phosphate-responsive protein (phi-1)
Gma.8449.1.S1_s_at
AF002258.1
0.019563038
CoA ligase 4
GmaAffx.14986.1.S1_at
BE657889
0.020669698
phosphate-responsive protein (phi-1)
GmaAffx.93611.1.S1_s_at
CF809336
0.034312943
disease resistance response protein (DRRG49-C)
Signal transduction
Gma.1965.1.S1_x_at
L01432.1
0.005201937
calmodulin (SCaM-3)
GmaAffx.50980.1.S1_x_at
BE823095
0.006003594
protein phosphatase 2C (PP2C)
Gma.11041.1.S1_at
BI970555
0.006660588
Pti1-like kinase-like
GmaAffx.33721.1.S1_at
BI967195
0.006660588
protein kinase
Gma.6290.1.S1_at
AW311265
0.007290178
BOTRYTIS-INDUCED KINASE1 (BIK1)
Gma.13604.1.S1_at
CD401537
0.011411572
protein kinase-like
Gma.9902.1.A1_at
AW395328
0.011756578
FUSCA 5 MAP kinase kinase (FUS5)
GmaAffx.56323.1.S1_at
BU764214
0.01212639
protein kinase
Gma.5162.1.A1_at
BI971156
0.013412317
Curculin-like (mannose-binding) protein kinase
Gma.4455.3.S1_at
CB063632
0.014076915
PROTEIN KINASE 2B (APK2B)
GmaAffx.21787.1.A1_at
AW348555
0.015096504
leucine-rich repeat transmembrane protein kinase (CLAVATA1)
GmaAffx.66511.1.S1_at
AW350917
0.019563038
calcium and calmodulin-dependent protein kinase (ATCDPK1)