Microarray Detection Call Methodology as a Means to Identify and Compare Transcripts Expressed within Syncytial Cells from Soybean (Glycine max) Roots Undergoing Resistant and Susceptible Reactions to the Soybean Cyst Nematode (Heterodera glycines)

Table 1

Select genes that were unique to the 3 dpi syncytia undergoing an incompatible reaction but that were not differentially expressed as compared to a pericycle control sample (Figure 8(b)) comprising the Disease and Defense, Signaling, and Transcription categories.

I-3 dpi
Probe set ID	Public ID	Avg 𝑃-value	Gene
Disease & defense
Gma.4886.2.S1_at	AW234624	0.005201937	haem peroxidase
GmaAffx.69994.1.S1_at	CD417025	0.017952293	phosphate-responsive protein (phi-1)
Gma.8449.1.S1_s_at	AF002258.1	0.019563038	CoA ligase 4
GmaAffx.14986.1.S1_at	BE657889	0.020669698	phosphate-responsive protein (phi-1)
GmaAffx.93611.1.S1_s_at	CF809336	0.034312943	disease resistance response protein (DRRG49-C)
Signal transduction
Gma.1965.1.S1_x_at	L01432.1	0.005201937	calmodulin (SCaM-3)
GmaAffx.50980.1.S1_x_at	BE823095	0.006003594	protein phosphatase 2C (PP2C)
Gma.11041.1.S1_at	BI970555	0.006660588	Pti1-like kinase-like
GmaAffx.33721.1.S1_at	BI967195	0.006660588	protein kinase
Gma.6290.1.S1_at	AW311265	0.007290178	BOTRYTIS-INDUCED KINASE1 (BIK1)
Gma.13604.1.S1_at	CD401537	0.011411572	protein kinase-like
Gma.9902.1.A1_at	AW395328	0.011756578	FUSCA 5 MAP kinase kinase (FUS5)
GmaAffx.56323.1.S1_at	BU764214	0.01212639	protein kinase
Gma.5162.1.A1_at	BI971156	0.013412317	Curculin-like (mannose-binding) protein kinase
Gma.4455.3.S1_at	CB063632	0.014076915	PROTEIN KINASE 2B (APK2B)
GmaAffx.21787.1.A1_at	AW348555	0.015096504	leucine-rich repeat transmembrane protein kinase (CLAVATA1)
GmaAffx.66511.1.S1_at	AW350917	0.019563038	calcium and calmodulin-dependent protein kinase (ATCDPK1)
GmaAffx.34312.1.S1_at	AI965735	0.023684433	protein phosphatase 2C (PP2C)
GmaAffx.64402.1.S1_at	AW317282	0.025399823	leucine-rich repeat
Gma.4801.1.S1_s_at	BU548608	0.028086024	protein phosphatase 1 (PP1)
Gma.11291.1.S1_at	AW351207	0.028086024	inositol 1,3,4-trisphosphate 5/6-kinase
GmaAffx.73451.1.S1_at	BG046889	0.034312943	CALMODULIN-RELATED PROTEIN 2
Transcription
Gma.7212.1.S1_at	BE658102	0.005553929	SUPPRESSOR OF FRIGIDA4 (SUF4)
GmaAffx.67609.1.S1_at	BG551013	0.009290923	SAR DNA-binding protein-1
Gma.4165.1.S1_at	BI969143	0.015813164	homeodomain-related
Gma.4164.1.S1_at	BI968666	0.016772715	MYB transcription factor (MYB112)
GmaAffx.1165.1.S1_at	BI425542	0.01738237	jasmonate-responsive promoter element
Gma.15724.2.S1_at	AW350291	0.018668953	CCR4 associated factor 1-related protein
Gma.1772.1.S1_at	CD406036	0.020753499	transcription factor IIA (TFIIA)
GmaAffx.52970.1.S1_at	BU548330	0.021323422	zinc finger (DHHC type) family protein
Gma.4560.1.S1_at	CD393558	0.022830045	TINY-like
Gma.12330.2.S1_s_at	BI972758	0.027055562	pathogenesis-related transcriptional factor
Gma.6838.1.S1_at	AW349633	0.027055562	NIM1-like protein 1 (NPR-1)
Gma.13614.1.A1_at	CD402000	0.034312943	zinc finger protein