Microarray Detection Call Methodology as a Means to Identify and Compare Transcripts Expressed within Syncytial Cells from Soybean (Glycine max) Roots Undergoing Resistant and Susceptible Reactions to the Soybean Cyst Nematode (Heterodera glycines)
Table 4
An analysis compared the 3 dpi syncytia undergoing an incompatible reaction directly to the 3 dpi compatible syncytium samples. Selected genes that were unique to the 3 dpi syncytia undergoing an incompatible reaction but that were not differentially expressed as compared directly to the 3 dpi compatible syncytium samples (Figure 8(h)) comprising the Disease and Defense, Signaling, and Transcription categories are provided.
I-3 dpi genes in the comparison of I-3 dpi to C-3 dpi
Probe set ID
Public ID
Avg -value
Gene
Disease & defense
Gma.4886.2.S1_at
AW234624
0.005201937
haem peroxidase
Gma.405.1.A1_at
AI443411
0.008396837
leucine-rich repeat family protein (DRT100)
Gma.2044.2.S1_at
BE821230
0.011411572
abscisic stress ripening-like protein
GmaAffx.92230.1.A1_s_at
CF807955
0.012305657
thaumatin-like protein PR-5b
Gma.7542.2.S1_at
CA936764
0.016772715
defender against cell death 1 (DAD-1)
Gma.8449.1.S1_s_at
AF002258.1
0.019563038
CoA ligase 4
GmaAffx.14986.1.S1_at
BE657889
0.020669698
PHOSPHATE-INDUCED 1 (phi-1)
GmaAffx.2203.1.S1_at
CD415745
0.020669698
cadmium-induced protein
GmaAffx.91141.1.S1_at
CF806866
0.020828644
peroxidase 1 precursor
GmaAffx.46214.1.S1_at
BE659266
0.022934167
polyphenol oxidase
Signal transduction
Gma.13604.1.S1_at
CD401537
0.011411572
protein kinase
GmaAffx.56323.1.S1_at
BU764214
0.01212639
protein kinase
Gma.6092.1.S1_at
BI968757
0.012305657
COP9 signalosome subunit 3
Gma.5162.1.A1_at
BI971156
0.013412317
Curculin-like (mannose-binding) lectin protein kinase
Gma.4455.3.S1_at
CB063632
0.014076915
PROTEIN KINASE 2B (APK2B)
GmaAffx.66511.1.S1_at
AW350917
0.019563038
calcium and calmodulin-dependent protein kinase (ATCDPK1)
GmaAffx.34312.1.S1_at
AI965735
0.023684433
protein phosphatase 2C (PP2C)
GmaAffx.64402.1.S1_at
AW317282
0.025399823
leucine-rich repeat
Gma.4801.1.S1_s_at
BU548608
0.028086024
protein phosphatase 1 (PP1)
Gma.11291.1.S1_at
AW351207
0.028086024
inositol 1,3,4-trisphosphate 5/6-kinase
GmaAffx.73451.1.S1_at
BG046889
0.034312943
CALMODULIN-RELATED PROTEIN 2
Transcription
GmaAffx.89077.1.A1_s_at
CK605647
0.009323331
CONSTANS interacting protein 2a
Gma.3996.1.S1_at
AW394946
0.014307059
WRKY52
Gma.9678.1.S1_at
CD404894
0.016707249
RNA polymerase II
Gma.12330.2.S1_s_at
BI972758
0.027055562
pathogenesis-related transcriptional factor
Gma.6838.1.S1_at
AW349633
0.027055562
NIM1-like protein 1 (NPR-1)
Gma.16645.1.S1_at
BM143429
0.028086024
Arabidopsis NAC domain-containing protein 1 (ATAF1)
