Microarray Detection Call Methodology as a Means to Identify and Compare Transcripts Expressed within Syncytial Cells from Soybean (Glycine max) Roots Undergoing Resistant and Susceptible Reactions to the Soybean Cyst Nematode (Heterodera glycines)
Table 5
An analysis compared the 3 dpi syncytia undergoing an incompatible reaction directly to the 3 dpi compatible syncytium samples. Selected genes that were unique to the 3 dpi syncytia undergoing a compatible reaction but that were not differentially expressed as compared directly to the 3 dpi incompatible syncytium samples (Figure 8(h)) comprising the Disease and Defense, Signaling, and Transcription categories.
C-3 dpi genes in the comparison of I-3 dpi to C-3 dpi
Probe set ID
Public ID
Avg -value
Gene
Disease & defense
GmaAffx.36484.1.S1_s_at
BI425441
0.001672877
PR1a
Gma.6091.1.S1_at
AW310762
0.00221961
haem peroxidase
Gma.2523.1.S1_s_at
CA852440
0.002747901
R 14 protein
GmaAffx.85114.1.S1_s_at
AW760844
0.003021268
Malus major allergen (Mal d 1.07)
Gma.4312.3.S1_a_at
BF424240
0.003822926
glutathione peroxidase (GSH-PX3)
Gma.257.2.S1_a_at
CD400364
0.005553929
cysteine proteinase inhibitor
GmaAffx.36514.1.S1_at
BE658341
0.005553929
cationic peroxidase
Gma.6299.3.S1_at
BU547701
0.00603523
selenium binding protein
GmaAffx.92699.1.S1_s_at
CF808424
0.006308596
PR-5 protein
Gma.5141.1.S1_at
BI971102
0.007667593
laccase 3 (LAC3)
Gma.9504.1.S1_at
CA803130
0.007680178
plant disease resistance response protein
Gma.18084.1.S1_at
BI317557
0.008396837
RESPIRATORY BURST OXIDASE HOMOLOG (ATRBOHB)
Gma.8144.1.A1_at
BU548599
0.009323331
cationic peroxidase
GmaAffx.11893.1.A1_at
CD414188
0.01212639
regulator of chromatin condensation-1 (RCC1)
Gma.4077.1.S1_at
CD414118
0.012696314
ASR protein
Gma.7257.2.S1_at
BG155489
0.016427052
soluble epoxide hydrolase
GmaAffx.71331.1.S1_at
AW597101
0.018428453
galactosyltransferase family protein
GmaAffx.52146.1.S1_at
CA934966
0.028086024
PATHOGENESIS-RELATED 4 (PR4)
Gma.9638.1.A1_at
CA936403
0.029056963
ADR6
Signal transduction
GmaAffx.92136.1.S1_s_at
CF807451
0.001672877
Curculin-like (mannose-binding) lectin protein kinase
Gma.6338.1.S1_at
AI442775
0.001946244
protein phosphatase 2C (PP2C)
Gma.3893.1.S1_at
U44850.1
0.002298236
Arabidopsis thaliana Homolog of the Tobacco ArcA (ATARCA)
Gma.4228.1.S1_at
AI856764
0.002298236
RelA-SpoT like protein (RSH3)
Gma.13033.1.A1_a_at
CD392795
0.002298236
calcium-dependent calmodulin-independent protein kinase (CDPK)
Gma.6709.1.S1_at
BE823291
0.002747901
CBL-interacting protein kinase 22
Gma.10697.2.S1_at
AW424151
0.003591192
protein phosphatase 2A catalytic subunit
Gma.11006.1.S1_s_at
AW706204
0.00492857
CBL-interacting protein kinase
Gma.6359.1.S1_at
CD398481
0.005201937
caltractin-like
GmaAffx.92229.1.S1_s_at
CF806381
0.005553929
14-3-3 protein
Gma.4507.1.S1_at
BG653255
0.006308596
leucine-rich repeat protein
Gma.568.1.S1_at
BI967984
0.007110254
LRR receptor-like protein kinase
GmaAffx.90655.1.S1_s_at
CF806380
0.007680178
14-3-3-like protein C (SGF14C)
GmaAffx.91570.1.A1_s_at
CF807732
0.008019584
JUN-activation-domain-binding protein
Gma.4049.1.S1_at
BQ786519
0.008184263
wall-associated kinase (WAK-like kinase)
Gma.3083.1.S1_at
BE474466
0.008396837
BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)
Gma.7517.1.S1_at
BU548272
0.009290923
protein kinase
GmaAffx.25928.1.S1_at
CD414013
0.012305657
WD-40 repeat protein
Gma.15907.1.A1_at
CD407154
0.014307059
leucine-rich repeat protein
Gma.3852.1.S1_at
CD399104
0.014771313
serine/threonine-protein phosphatase PP1
GmaAffx.57055.1.S1_at
AW203411
0.015413718
Arabidopsis thaliana MAP kinase 2 (ATMPK20)
Gma.10215.1.S1_a_at
AY263347.1
0.016307345
Pti1-like kinase
GmaAffx.85565.1.S1_at
BE611082
0.018428453
calcium-dependent protein kinase 29 (CPK29)
Gma.7177.2.A1_a_at
BI425372
0.018428453
Cdc2-related protein kinase (CRK2)
GmaAffx.35805.2.S1_at
BF324178
0.019563038
MAP3K delta-1 protein kinase-like
Gma.10798.1.S1_at
CD401168
0.019563038
protein phosphatase 2A (PP2A)
Gma.2314.1.S1_at
AW310385
0.019678474
ARABIDOPSIS FUS3-COMPLEMENTING GENE (AFC2)
Gma.1517.2.S1_a_at
BE059859
0.019951841
calcium dependent calmodulin independent protein kinase (CDPK)
Gma.6123.1.S1_at
AW349800
0.020669698
VERNALIZATION INDEPENDENCE 3 (VIP3)
GmaAffx.69025.1.S1_at
BM271195
0.020753499
RIO kinase
GmaAffx.62926.1.S1_at
BE804949
0.020828644
extra-large GTP-binding protein 3 (XLG3)
GmaAffx.40750.1.S1_s_at
BG352469
0.022028694
protein phosphatase 2A regulatory subunit (PP2A)
GmaAffx.44305.1.S1_at
BU551393
0.022830045
transmembrane protein
Gma.3185.2.S1_at
BM890715
0.023684433
leucine-rich repeat transmembrane protein
Gma.11015.1.S1_at
CD398110
0.023684433
leucine-rich repeat transmembrane protein
GmaAffx.15664.1.S1_at
BE607642
0.024040827
leucine-rich repeat transmembrane protein
Gma.1423.1.S1_s_at
AI960045
0.024040827
BRASSINAZOLE-RESISTANT 1 (BZR1)
Gma.4044.1.S1_at
BE821233
0.025399823
Pescadillo-like
GmaAffx.89525.1.S1_s_at
CK606517
0.027055562
protein phosphatase 1 (PP1)
Gma.7387.1.A1_a_at
CD396910
0.027055562
pseudo-response regulator
Gma.5722.1.S1_at
BU546228
0.029056963
Ste20-related protein kinase
Transcription
Gma.1538.1.S1_a_at
AW351115
0.002298236
salt tolerance protein 6
Gma.12279.1.A1_at
CD397826
0.00337326
basic helix-loop-helix (bHLH)
Gma.5331.1.S1_at
BI892702
0.004307852
no apical meristem (NAM) protein NAC4
Gma.593.2.S1_x_at
CA800286
0.00492857
MYB transcription factor (MYB173)
GmaAffx.5069.2.A1_at
BM121565
0.005201937
basic-leucine zipper (bZIP111)
GmaAffx.50673.1.S1-at
BF425742
0.005679433
no apical meristem (NAM) protein (NAC)
GmaAffx.93436.1.A1-s-at
CF809161
0.007680178
AP2/EREBP transcription factor ERF-2
GmaAffx.38951.1.S1_at
BI322098
0.008396837
basic-leucine zipper (bZIP)
Gma.16172.1.S1_at
CD411627
0.009049965
CONSTANS-LIKE 13
Gma.3730.2.S1_a_at
BI320846
0.009290923
WRKY27
Gma.15862.1.S1_at
BI970593
0.009323331
pathogenesis-related transcriptional factor and ERF
Gma.2702.2.S1_at
AI855587
0.010649919
no apical meristem (NAM) protein
Gma.163.1.S1_at
AB029269.1
0.014076915
MYB transcription factor (MYB12)
Gma.16613.1.S1_s_at
BU760651
0.014307059
zinc finger
GmaAffx.81234.1.A1_at
BE823765
0.014307059
MYB-TRFL8 (TRF-LIKE 8)
GmaAffx.15471.1.S1_at
BQ611747
0.014526581
MYB transcription factor (MYB139)
Gma.17432.1.S1_s_at
AW277783
0.015813164
RNA polymerase subunit (RPB5)
Gma.13174.1.S1_s_at
CD414686
0.016772715
aux/IAA protein (IAA13)
GmaAffx.71523.1.S1_at
BU544012
0.01738237
Polycomb group-NAP1-RELATED PROTEIN 1 (NRP1)
Gma.15460.1.S1_at
CD403496
0.018032044
ethylene-induced calmodulin binding protein (EICBP.B)