Methodology Report

Development of a Novel Bioinformatics Tool for In Silico Validation of Protein Interactions

Table 1

List of the atoms considered as acceptors and donors. For both classes, the 3-letter codes of the amino acids, the symbol used in the PDB files of the considered atom, and the maximum number of hydrogen bonds of atom are reported.

AcceptorsDonors

allO1allN1
ASPOD12HISNE21
ASPOD22HISND11
GLUOE12LYSNZ3
GLUOE22ASNND22
GLNOE11GLNNE22
ASNOD11ARGNE1
SEROG1ARGNH12
THROG11ARGNH22
TRPNE11
SEROG1
THROG11
TYROH1