BioMed Research International / 2010 / Article / Tab 3 / Research Article
Correctness of Protein Identifications of Bacillus subtilis Proteome with the Indication on Potential False Positive Peptides Supported by Predictions of Their Retention Times Table 3 Test peptides from proteins of Bacillus subtilis proteome, identified on the basis of more than one peptide with
š
c
o
r
r
above 1.5.
Peptide sequence m/z Missed cleavages Charge
š
c
o
r
r
l
o
g
S
u
m
(
š
+
1
)
A
A
c
l
o
g
P
š”
š
e
x
p
š”
š
p
r
e
d
Dt R ALDMLEASPVQGFDAK 846.96 0 2 4.90 1.52
ā
4
.
7
1
32.56 27.66 4.90 ITGTSNYEDTAGSDIVVITAGIAR 1213.32 0 2 4.87 1.63
ā
6
.
3
8
34.61 30.19 4.42 RHDDYDSKK 582.61 1 2 2.57 1.10
ā
7
.
9
0
12.26 11.84 0.42 KPHHHCDDYK 640.70 1 2 3.17 1.13
ā
6
.
1
2
14.34 14.26 0.08 DYLYQEPHGK 625.67 0 2 2.60 1.33
ā
4
.
7
2
24.86 21.52 3.34 EGLKDYLYQEPHGK 839.42 1 2 2.81 1.46
ā
5
.
9
9
30.89 25.03 5.86 KEGLKDYLYQEPHGK 903.51 2 2 3.71 1.48
ā
4
.
7
9
32.18 26.41 5.77 YYKKPHHHCDDYK 867.96 2 2 1.94 1.38
ā
4
.
2
9
33.93 23.46 10.47 GTAMAYDQIDGAPEER 862.92 0 2 3.63 1.38
ā
8
.
0
6
23.43 20.86 2.57 TVGSGVVSTITE 1150.26 0 1 1.42 1.27
ā
5
.
0
7
24.54 19.44 5.10 GITISTAHVEYETETR 904.47 0 2 4.86 1.44
ā
7
.
3
9
24.43 23.06 1.37 GQVLAKPGTITPHSK 767.89 1 2 2.77 1.37
ā
6
.
8
2
27.57 21.33 6.24 VGDEVEIIGLQEENKK 900.99 1 2 4.59 1.46
ā
6
.
0
8
29.49 24.80 4.69 HYAHVDCPGHADYVK 856.94 0 2 4.62 1.39
ā
4
.
9
5
30.91 23.30 7.61 DLLSEYDFPGDDVPVVK 955.04 0 2 4.92 1.58
ā
4
.
4
6
35.03 30.00 5.03 LLDYAEAGDNIGALLR 852.95 0 2 3.63 1.59
ā
4
.
4
9
36.17 30.20 5.97 NMITGAAQMDGAILVVSAADGPMPQTR 1359.07 0 2 5.04 1.64
ā
7
.
2
0
37.02 29.78 7.24 SHANIGTIGHVDHGKTTLTAAITTVLHKKSGK 1099.25 3 3 3.27 1.72
ā
1
1
.
8
3
39.57 28.71 10.86 NVGVPYIVVFLNKCDMVDDEELLELVEMEVR 1806.60 1 2 4.26 1.85
ā
4
.
9
7
53.42 38.15 15.27 ALAPEIVGEEHYAVAR 863.46 0 2 2.54 1.46
ā
4
.
8
7
30.36 25.85 4.51 EGNDLFYEMSDSGVINK 960.03 0 2 4.61 1.56
ā
6
.
5
7
31.77 27.82 3.95 GMEAVDTGAPISVPVGDVTLGR 1071.71 0 2 5.50 1.54
ā
5
.
6
8
32.56 27.81 4.75 VFNVLGENIDLNEPVPADAK 1078.20 0 2 5.91 1.61
ā
5
.
1
5
34.41 30.44 3.97 KLTEMGIYPAVDPLASTSR 1025.68 1 2 3.85 1.56
ā
4
.
8
0
34.63 29.00 5.63 VQPGQQHLKR 596.18 1 2 2.37 1.18
ā
6
.
7
7
15.36 15.23 0.13 IVSINPADKEEVVGR 813.92 0 2 3.32 1.40
ā
5
.
9
3
27.21 22.88 4.33 AGGPDYLALHMQAK 736.85 0 2 3.68 1.43
ā
4
.
6
3
29.65 24.93 4.72 VSDFDEALEVANNTEYGLTGAVITNNRK 1014.75 1 3 4.37 1.72
ā
9
.
4
3
36.85 30.66 6.19 GYFIKPTIFADLDPK 863.50 1 2 3.55 1.62
ā
1
.
1
2
38.36 33.88 4.48 LMQEEIFGPVVAFCK 856.54 0 2 3.25 1.59
ā
0
.
0
8
40.34 33.48 6.86 QQNQSAEQNKQQNS 816.82 1 2 2.81 1.15
ā
1
3
.
8
3
9.13 8.82 0.31 KQNQQSAAGQGQFGTEFASETNAQQVR 1456.52 1 2 5.75 1.61
ā
1
1
.
7
8
25.84 25.38 0.46 YDDYDKK 946.98 1 1 1.90 1.15
ā
2
.
9
7
13.79 17.24 3.45 DYDCDYDKK 583.11 1 2 2.76 1.21
ā
5
.
8
1
16.52 16.93 0.41 DYDYVVEYK 597.64 0 2 3.30 1.34
ā
3
.
3
1
25.78 23.08 2.70 DYDYVVEYKK 661.72 1 2 2.57 1.36
ā
3
.
3
2
26.07 23.70 2.37 VGNDGVITIEESK 681.24 0 2 2.66 1.34
ā
6
.
2
0
23.92 20.83 3.09 FGSPLITNDGVTIAK 767.38 0 2 2.73 1.52
ā
4
.
1
6
30.33 28.23 2.10 EIELEDAFENMGAK 798.87 0 2 3.31 1.46
ā
5
.
9
6
32.86 25.01 7.85 ESIAQVAAISAADEEVGSLIAEAMER 1331.46 0 2 6.41 1.64
ā
8
.
7
9
46.55 28.48 18.07 WNTNAGDDYVSNGPFK 893.43 0 2 2.63 1.57
ā
5
.
8
3
27.55 28.40 0.85 GVIMPGTGEVYFR 713.83 0 2 2.42 1.47
ā
1
.
2
6
32.23 28.95 3.28 ADYTGPDKQK 562.10 1 2 2.85 1.13
ā
5
.
8
9
14.13 14.44 0.31 MLTEIGEVENAEPYIR 933.05 0 2 4.38 1.51
ā
4
.
6
1
31.8 27.65 4.15 EDYGIAENFLYTLNGEEPSPIEVEAFNK 1595.71 0 2 3.18 1.80
ā
7
.
2
2
40.25 35.03 5.22 MSGWLAHILEQYDNNRLIRPR 861.99 2 3 3.54 1.73
ā
7
.
6
2
43.05 32.45 10.60 VLQQPNCLEVTISPNGNK 978.11 0 2 4.43 1.50
ā
5
.
9
3
28.75 26.15 2.60 YRDNNYLDDEHEVIAK 998.05 1 2 4.61 1.50
ā
6
.
8
5
29.35 25.49 3.86 IVVQAEREFLAEVVGETK 1009.65 1 2 2.99 1.56
ā
4
.
4
8
38.2 29.17 9.03 IVNPLGQPVDGLGPILTSK 960.13 0 2 5.18 1.60
ā
3
.
3
6
35.86 31.39 4.47 KGRNPQTGEEIEIPASKVPAFKPGK 894.02 4 3 4.53 1.59
ā
7
.
2
1
33.22 28.24 4.98 MNKTELINAVAEASELSK 975.11 1 2 5.11 1.50
ā
6
.
3
8
35.32 25.91 9.41 MNKTELINAVAEASELSKK 1039.19 2 2 5.25 1.51
ā
6
.
5
8
35.64 26.19 9.45 AVDSVFDTILDALKNGDKIQLIGFGNFEVR 1099.57 2 3 5.81 1.87
ā
5
.
3
0
50.01 38.68 11.33
