BioMed Research International / 2010 / Article / Tab 5

Research Article

Correctness of Protein Identifications of Bacillus subtilis Proteome with the Indication on Potential False Positive Peptides Supported by Predictions of Their Retention Times

Table 5

Test peptides from proteins of Bacillus subtilis proteome, identified on the basis of one peptide with 𝐗 c o r r below 1.5.

Peptide sequencem/zMissed cleavagesCharge 𝑋 c o r r l o g S u m ( π‘˜ + 1 ) A A c l o g P 𝑑 𝑅 e x p 𝑑 𝑅 p r e d Dt R

RADGSINQHPQER754.79121.40141.2128 βˆ’ 1 0 . 2 8 14.9413.671.27
KGTDWNLYFWTAASYNAVIFVFVLV1463.68121.00821.9367 βˆ’ 5 . 7 9 42.3940.382.01
ALECFKEMTTKI707.86221.02121.4322 βˆ’ 5 . 6 3 26.6324.272.36
VKVIKPDP896.11210.93911.1301 βˆ’ 1 . 6 3 15.6417.591.95
AQLSEKKGADGYL1380.53211.15441.3902 βˆ’ 5 . 2 6 26.4623.203.26
TRLMGLILAVVAVGMIGAG922.17121.06331.6382 βˆ’ 6 . 6 1 33.6130.153.46
SDNNIDKTL1020.08111.22581.2125 βˆ’ 8 . 5 4 18.8714.983.89
EEKENWVL524.07120.91811.3569 βˆ’ 5 . 1 26.2622.254.01
SWIGLPAPIFAGIAAIFAIQP718.86031.28191.8072 βˆ’ 3 . 1 3 33.6438.244.60
LLGILTGFFMIGAKRP868.09220.97761.6883 βˆ’ 3 . 3 2 39.4234.275.15
ELSASMG694.78011.16851.0896 βˆ’ 5 . 9 8 18.3312.985.35
KHGVHIVAGSVAVRKNSDVYNTMYI920.72331.23861.6583 βˆ’ 1 1 . 8 1 33.6126.846.77
DGWKVCLGKVGSMDAHKVVAAIETASKKSG1025.52531.20371.7212 βˆ’ 1 3 . 4 6 37.7227.6110.11
EYLDLLEKNVPYPAPSDLIFWSNEDY1044.81131.14651.8645 βˆ’ 4 . 7 7 48.3338.839.50
KAEDLLRKVGLFEKRNDY1098.25521.02091.6135 βˆ’ 5 . 9 8 39.5229.839.69
LLFKPNEERS617.20221.12891.3877 βˆ’ 3 . 8 6 10.3724.1813.81
EVTPEIEAAAGKGFTI817.41121.01591.4795 βˆ’ 9 . 5 1 9.0322.8413.81
NRVEYVKAEIQI731.84221.03011.3873 βˆ’ 5 . 2 2 40.0923.1316.96
LEEFKKDLH580.16220.86291.3695 βˆ’ 3 . 2 4 6.9424.0717.13
AGQHERLKEMNVTDT865.45221.01661.3300 βˆ’ 8 . 4 7 37.3718.8218.55
TGALIVYTSADSVLQIAAHEEVVPLEE952.72031.13871.7286 βˆ’ 5 . 6 9 52.1233.7618.36
KIDKSIFPGIQGGPLMH613.73231.05261.5877 βˆ’ 4 . 1 1 12.0330.4318.40
QMLRMMMMQMGMKPSQKKINQMMK1481.93421.32231.6338 βˆ’ 9 . 9 3 49.3427.4821.86
RILLSLFLS531.67120.96811.5406 βˆ’ 3 . 0 2 8.1929.7421.55
LTELQVRHII1222.46111.37161.4101 βˆ’ 5 . 6 4 48.0623.5524.51
EPIQSFFQID1224.34011.13691.4701 βˆ’ 4 . 1 7 51.9226.6025.32
NRAVGFISFVI1223.45111.16161.5144 βˆ’ 4 . 6 2 58.5927.6830.91
IHTLEHLLAFTI1408.67011.00821.5688 βˆ’ 5 . 1 3 81.0429.0452.00
GQEQLIPPLIL1221.47011.39771.4715 βˆ’ 4 . 7 9 81.3426.1755.17
PIITVAKEAWPTL1439.72110.99681.5364 βˆ’ 6 . 3 4 83.1727.0856.09
IIGYLDQME541.63021.05831.3894 βˆ’ 2 . 1 2 83.8425.5658.28
IGLLIFLP886.16011.20411.5192 1 . 1 7 93.9732.2461.73
IVLKY635.82110.96411.2298 0 . 9 1 86.2022.7363.47
GIIAAYG664.77011.08651.2361 βˆ’ 0 . 4 3 89.2921.9267.37
PKCPV543.70110.9340.7843 βˆ’ 2 . 2 4 77.726.0071.72
PQTPVP638.74011.19850.8503 βˆ’ 2 . 8 3 80.377.6872.69
LAAGISTI745.89011.16111.2704 βˆ’ 5 . 2 4 92.6219.3673.26
IDFPTNITMD1167.31011.33161.3871 βˆ’ 5 . 3 96.8023.0773.73
DGITDVL732.80011.02161.1875 βˆ’ 6 . 2 93.515.9677.54
HGGSLSAPAIH1047.15011.23721.2628 βˆ’ 6 . 4 97.0318.2378.80

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