Uncovering the Complexity of Transcriptomes with RNA-Seq

Table 1

Selection of papers on mammalian RNA-Seq.

Reference	Organism	Cell type/tissue	NGS platform
Bainbridge et al., 2006 [27]	Homo sapiens	Prostate cancer cell line	Roche
Cloonan et al., 2008 [30]	Mus musculus	ES cells and Embryoid bodies	ABI
Core et al., 2008 [31]	Homo sapiens	Lung fibroblasts	IIlumina
Hashimoto et al., 2008 [32]	Homo sapiens	HT29 cell line	ABI
Li et al., 2008 [33]	Homo sapiens	Prostate cancer cell line	IIlumina
Marioni et al., 2008 [34]	Homo sapiens	Liver and kidney samples	IIlumina
Morin et al., 2008 [35]	Homo sapiens	ES cells and Embryoid bodies	IIlumina
Morin et al., 2008 [36]	Homo sapiens	HeLa S3 cell line	IIlumina
Mortazavi et al., 2008 [37]	Mus musculus	Brain, liver and skeletal muscle	IIlumina
Rosenkran et al., 2008 [38]	Mus musculus	ES cells	IIlumina
Sugarbaker et al., 2008 [39]	Homo sapiens	Malignant pleural mesothelioma, adenocarcinoma and normal lung	Roche
Sultan et al., 2008 [40]	Homo sapiens	Human embryonic kidney and B cell line	IIlumina
Asmann et al., 2009 [41]	Homo sapiens	Universal and brain human reference RNAs	IIlumina
Chepelev et al., 2009 [42]	Homo sapiens	Jurkat and GD4^+ T cells	IIlumina
Levin et al., 2009 [43]	Homo sapiens	K562	IIlumina
Maher et al., 2009 [44]	Homo sapiens	Prostate cancer cell lines	Roche
			IIlumina
Parkhomchuk et al., 2009 [45]	Mus musculus	Brain	IIlumina
Reddy et al., 2009 [46]	Homo sapiens	A549 cell line	IIlumina
Tang et al., 2009 [47]	Mus musculus	Blastomere and oocyte	ABI
Blekhman et al., 2010 [48]	Homo sapiens,	Liver	IIlumina
	Pan troglodytes,
	Rhesus macaca.
Heap et al., 2010 [49]	Homo sapiens	Primary GD4^+ T cells	IIlumina
Raha et al., 2010 [50]	Homo sapiens	K562 cell line	IIlumina