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Journal of Biomedicine and Biotechnology
Volume 2011 (2011), Article ID 934756, 6 pages
http://dx.doi.org/10.1155/2011/934756
Research Article

The Fur Transcription Regulator and Fur-Regulated Genes in Clostridium botulinum A ATCC 3502

School of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou, Zhejiang 310035, China

Received 19 August 2011; Revised 30 September 2011; Accepted 10 October 2011

Academic Editor: Ayman El-Kadi

Copyright © 2011 Weibin Zhang et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. C. Wandersman and I. Stojiljkovic, “Bacterial heme sources: the role of heme, hemoprotein receptors and hemophores,” Current Opinion in Microbiology, vol. 3, no. 2, pp. 215–220, 2000. View at Publisher · View at Google Scholar · View at Scopus
  2. V. Braun, “Iron uptake mechanisms and their regulation in pathogenic bacteria,” International Journal of Medical Microbiology, vol. 291, no. 2, pp. 67–79, 2001. View at Google Scholar · View at Scopus
  3. B. Halliwell and J. M. C. Gutteridge, “Oxygen toxicity, oxygen radicals, transition metals and disease,” Biochemical Journal, vol. 219, no. 1, pp. 1–14, 1984. View at Google Scholar · View at Scopus
  4. N. Vassinova and D. Kozyrev, “A method for direct cloning of Fur-regulated genes: Identification of seven new Fur-regulated loci in Escherichia coli,” Microbiology, vol. 146, no. 12, pp. 3171–3182, 2000. View at Google Scholar · View at Scopus
  5. E. Pohl, J. C. Haller, A. Mijovilovich, W. Meyer-Klaucke, E. Garman, and M. L. Vasil, “Architecture of a protein central to iron homeostasis: crystal structure and spectroscopic analysis of the ferric uptake regulator,” Molecular Microbiology, vol. 47, no. 4, pp. 903–915, 2003. View at Publisher · View at Google Scholar · View at Scopus
  6. P. K. Fang, B. H. Raphael, S. E. Maslanka, S. Cai, and B. R. Singh, “Analysis of genomic differences among Clostridium botulinum type A1 strains,” BMC Genomics, vol. 11, article 725, 2010. View at Publisher · View at Google Scholar · View at Scopus
  7. Z. Chen, K. A. Lewis, R. K. Shultzaberger et al., “Discovery of Fur binding site clusters in Escherichia coli by information theory models,” Nucleic Acids Research, vol. 35, no. 20, pp. 6762–6777, 2007. View at Publisher · View at Google Scholar · View at Scopus
  8. H. L. Pedersen, R. Ahmad, E. K. Riise et al., “Experimental and computational characterization of the ferric uptake regulator from Aliivibrio salmonicida (Vibrio salmonicida),” Journal of Microbiology, vol. 48, no. 2, pp. 174–183, 2010. View at Publisher · View at Google Scholar · View at Scopus
  9. M. Kanehisa and Subramaniam, “The KEGG database,” Novartis Foundation Symposium, vol. 247, pp. 91–103, 2002. View at Google Scholar · View at Scopus
  10. J. D. Thompson, T. J. Gibson, and D. G. Higgins, “Multiple sequence alignment using ClustalW and ClustalX,” Current Protocols in Bioinformatics, Chapter 2, Unite 2.3, 2002. View at Scopus
  11. K. Tamura, J. Dudley, M. Nei, and S. Kumar, “MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0,” Molecular Biology and Evolution, vol. 24, no. 8, pp. 1596–1599, 2007. View at Publisher · View at Google Scholar · View at Scopus
  12. E. J. Alm, K. H. Huang, M. N. Price et al., “The MicrobesOnline Web site for comparative genomics,” Genome Research, vol. 15, no. 7, pp. 1015–1022, 2005. View at Publisher · View at Google Scholar · View at Scopus
  13. G. E. Crooks, G. Hon, J. M. Chandonia, and S. E. Brenner, “WebLogo: a sequence logo generator,” Genome Research, vol. 14, no. 6, pp. 1188–1190, 2004. View at Publisher · View at Google Scholar · View at Scopus
  14. E. Milohanic, P. Glaser, J.-Y. Coppée et al., “Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA,” Molecular Microbiology, vol. 47, no. 6, pp. 1613–1625, 2003. View at Publisher · View at Google Scholar
  15. K. J. Livak and T. D. Schmittgen, “Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method,” Methods, vol. 25, no. 4, pp. 402–408, 2001. View at Publisher · View at Google Scholar · View at Scopus
  16. H. Brüggemann and G. Gottschalk, “Comparative genomics of clostridia: link between the ecological niche and cell surface properties,” Annals of the New York Academy of Sciences, vol. 1125, pp. 73–81, 2008. View at Publisher · View at Google Scholar · View at Scopus
  17. M. H. Serres, A. R. W. Kerr, T. J. McCormack, and M. Riley, “Evolution by leaps: gene duplication in bacteria,” Biology Direct, vol. 4, article no. 46, 2009. View at Publisher · View at Google Scholar · View at Scopus
  18. C. Dutta and A. Pan, “Horizontal gene transfer and bacterial diversity,” Journal of Biosciences, vol. 27, no. 1, pp. 27–33, 2002. View at Google Scholar · View at Scopus
  19. R. Quatrini, C. Lefimil, F. A. Veloso, I. Pedroso, D. S. Holmes, and E. Jedlicki, “Bioinformatic prediction and experimental verification of Fur-regulated genes in the extreme acidophile Acidithiobacillus ferrooxidans,” Nucleic Acids Research, vol. 35, no. 7, pp. 2153–2166, 2007. View at Publisher · View at Google Scholar · View at Scopus
  20. D. S. Merrell, L. J. Thompson, C. C. Kim et al., “Growth phase-dependent response of Helicobacter pylori to iron starvation,” Infection and Immunity, vol. 71, no. 11, pp. 6510–6525, 2003. View at Publisher · View at Google Scholar · View at Scopus
  21. V. Deslandes, J. H. E. Nash, J. Harel, J. W. Coulton, and M. Jacques, “Transcriptional profiling of Actinobacillus pleuropneumoniae under iron-restricted conditions,” BMC Genomics, vol. 8, article no. 72, 2007. View at Publisher · View at Google Scholar · View at Scopus
  22. T. F. Ducey, M. B. Carson, J. Orvis, A. P. Stintzi, and D. W. Dyer, “Identification of the iron-responsive genes of Neisseria gonorrhoeae by microarray analysis in defined medium,” Journal of Bacteriology, vol. 187, no. 14, pp. 4865–4874, 2005. View at Publisher · View at Google Scholar · View at Scopus
  23. M. Palma, S. Worgall, and L. E. N. Quadri, “Transcriptome analysis of the Pseudomonas aeruginosa response to iron,” Archives of Microbiology, vol. 180, no. 5, pp. 374–379, 2003. View at Publisher · View at Google Scholar · View at Scopus