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Journal of Biomedicine and Biotechnology
Volume 2012, Article ID 263910, 7 pages
http://dx.doi.org/10.1155/2012/263910
Methodology Report

MarVis-Filter: Ranking, Filtering, Adduct and Isotope Correction of Mass Spectrometry Data

1Department of Bioinformatics, Institute of Microbiology and Genetics, Georg-August-University Göttingen, 37077 Göttingen, Germany
2Department for Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, Georg-August-University Göttingen, 37077 Göttingen, Germany
3Department of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics, Georg-August-University Göttingen, 37077 Göttingen, Germany

Received 28 July 2011; Revised 18 January 2012; Accepted 18 January 2012

Academic Editor: Brad Upham

Copyright © 2012 Alexander Kaever et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [20 citations]

The following is the list of published articles that have cited the current article.

  • Stefanie König, Kirstin Feussner, Marnie Schwarz, Alexander Kaever, Tim Iven, Manuel Landesfeind, Philipp Ternes, Petr Karlovsky, Volker Lipka, and Ivo Feussner, “Arabidopsis mutants of sphingolipid fatty acid α-hydroxylases accumulate ceramides and salicylates,” New Phytologist, vol. 196, no. 4, pp. 1086–1097, 2012. View at Publisher · View at Google Scholar
  • Alexander Kaever, Manuel Landesfeind, Kirstin Feussner, Ivo Feussner, and Peter Meinicke, “Metabolite Clustering and Visualization of Mass Spectrometry Data Using One-Dimensional Self-Organizing Maps,” The Handbook of Plant Metabolomics, pp. 273–287, 2013. View at Publisher · View at Google Scholar
  • Dirk Balmer, Daniela Villacres de Papajewski, Chantal Planchamp, Gaëtan Glauser, and Brigitte Mauch-Mani, “Induced resistance in maize is based on organ-specific defence responses,” The Plant Journal, vol. 74, no. 2, pp. 213–225, 2013. View at Publisher · View at Google Scholar
  • Kathrin Petra Aßhauer, and Peter Meinicke, “On the estimation of metabolic profiles in metagenomics,” OpenAccess Series in Informatics, vol. 34, pp. 1–13, 2013. View at Publisher · View at Google Scholar
  • Victoria Pastor, Andrea Balmer, Jordi Gamir, Victor Flors, and Brigitte Mauch-Mani, “Preparing to fight back: generation and storage of priming compounds,” Frontiers in Plant Science, vol. 5, 2014. View at Publisher · View at Google Scholar
  • Victoria Pastor, Jordi Gamir, Gemma Camañes, Miguel Cerezo, Paloma Sánchez-Bel, and Victor Flors, “Disruption of the ammonium transporter AMT1.1 alters basal defenses generating resistance against Pseudomonas syringae and Plectosphaerella cucumerina,” Frontiers in Plant Science, vol. 5, 2014. View at Publisher · View at Google Scholar
  • Jordi Gamir, Victoria Pastor, Alexander Kaever, Miguel Cerezo, and Victor Flors, “ Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina ,” The Plant Journal, 2014. View at Publisher · View at Google Scholar
  • Manuel Landesfeind, Alexander Kaever, Kirstin Feussner, Corinna Thurow, Christiane Gatz, Ivo Feussner, and Peter Meinicke, “ Integrative study of Arabidopsis thaliana metabolomic and transcriptomic data with the interactive MarVis-Graph software ,” PeerJ, vol. 2, pp. e239, 2014. View at Publisher · View at Google Scholar
  • Blas Agut, Jordi Gamir, Josep A Jacas, Mónica Hurtado, and Victor Flors, “ Different metabolic and genetic responses in citrus may explain relative susceptibility to Tetranychus urticae ,” Pest Management Science, 2014. View at Publisher · View at Google Scholar
  • Alexander Kaever, Manuel Landesfeind, Kirstin Feussner, Burkhard Morgenstern, Ivo Feussner, and Peter Meinicke, “Meta-Analysis of Pathway Enrichment: Combining Independent and Dependent Omics Data Sets,” Plos One, vol. 9, no. 2, 2014. View at Publisher · View at Google Scholar
  • Alexander Kaever, Manuel Landesfeind, Kirstin Feussner, Alina Mosblech, Ingo Heilmann, Burkhard Morgenstern, Ivo Feussner, and Peter Meinicke, “MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data,” Metabolomics, 2014. View at Publisher · View at Google Scholar
  • Stefanie König, Kirstin Feussner, Alexander Kaever, Manuel Landesfeind, Corinna Thurow, Petr Karlovsky, Christiane Gatz, Andrea Polle, and Ivo Feussner, “ Soluble phenylpropanoids are involved in the defense response of Arabidopsis against Verticillium longisporum ,” New Phytologist, 2014. View at Publisher · View at Google Scholar
  • Blas Agut, Jordi Gamir, Josep A. Jaques, and Victor Flors, “ Tetranychus urticae -triggered responses promote genotype-dependent conspecific repellence or attractiveness in citrus ,” New Phytologist, 2015. View at Publisher · View at Google Scholar
  • Pablo Tarazona, Kirstin Feussner, and Ivo Feussner, “An enhanced plant lipidomics method based on multiplexed liquid chromatography-mass spectrometry reveals additional insights into cold- and drought-induced membrane remodeling,” The Plant Journal, 2015. View at Publisher · View at Google Scholar
  • Sven Haroth, Stefanie König, Florian Brodhun, Viktoria Bruckhoff, Kirstin Feussner, and Ivo Feussner, “Functional characterization of CYP94-genes and identification of a novel jasmonate catabolite in flowers,” PLoS ONE, vol. 11, no. 7, 2016. View at Publisher · View at Google Scholar
  • Sarah K. Tschirner, Heike Bähre, Alexander Kaever, Erich H. Schneider, Roland Seifert, and Volkhard Kaever, “Non-targeted metabolomics by high resolution mass spectrometry in HPRT knockout mice,” Life Sciences, 2016. View at Publisher · View at Google Scholar
  • Pierre Petriacq, Joost H. M. Stassen, and Jurriaan Ton, “Spore Density Determines Infection Strategy by the Plant Pathogenic Fungus Plectosphaerella cucumerina,” Plant Physiology, vol. 170, no. 4, pp. 2325–2339, 2016. View at Publisher · View at Google Scholar
  • Eugenio Llorens, Gemma Camañes, Leonor Lapeña, and Pilar García-Agustín, “Priming by Hexanoic Acid Induce Activation of Mevalonic and Linolenic Pathways and Promotes the Emission of Plant Volatiles,” Frontiers in Plant Science, vol. 7, 2016. View at Publisher · View at Google Scholar
  • Jordi Gamir, Victor Flors, Blas Agut, and Josep A. Jaques, “Systemic resistance in citrus to Tetranychus urticae induced by conspecifics is transmitted by grafting and mediated by mobile amino acids,” Journal of Experimental Botany, vol. 67, no. 19, pp. 5711–5723, 2016. View at Publisher · View at Google Scholar
  • Pierre Pétriacq, Alex Williams, Anne Cotton, Alexander E. McFarlane, Stephen A. Rolfe, and Jurriaan Ton, “Metabolite profiling of non-sterile rhizosphere soil,” The Plant Journal, 2017. View at Publisher · View at Google Scholar