Methodology Report
Utilization of Super BAC Pools and Fluidigm Access Array Platform for High-Throughput BAC Clone Identification: Proof of Concept
Table 1
Targeted BAC clone sequencing. Assembly statistics, including N50 contig size, max contig, and BLASTn -value correspondence with SNP query sequence.
| Positive BAC clone address |
SNP target | BAC Assembly Statistics |
BLASTn -value | No. of reads | No. of bases | Contigs (>500 bp) | N50 contig Size (bp) | Max contig (bp) | Number of bases |
| 16O4 | AM18081 | 28417 | 11346335 | 14 | 52842 | 58444 | 187937 | | 124I | AM20886 | 58578 | 21913991 | 15 | 25282 | 57023 | 181556 | | 3L14 | AM21120 | 12523 | 4717010 | 8 | 124794 | 124794 | 235849 | | 6M9 | AM21773 | 38937 | 14568922 | 15 | 23276 | 54030 | 125585 | | 13G11 | AM22193 | 13529 | 4999229 | 15 | 30565 | 40572 | 206077 | | 15O11 | AM23006 | 9887 | 3722293 | 9 | 30149 | 66008 | 184367 | | 9N2 | AM23895 | 26614 | 9798881 | 4 | 48808 | 56894 | 181431 | | 3L19 | AM25953 | 30301 | 11263931 | 7 | 147194 | 147194 | 164652 | |
| Average | | | | 10.9 | 60364 | 75620 | 183432 | |
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