BioMed Research International / 2012 / Article / Tab 3

Research Article

Copy-Number Variations Observed in a Japanese Population by BAC Array CGH: Summary of Relatively Rare CNVs

Table 3

Genes in BAC clones with CNVs.

BAC-clone numberChrom. numberPosition (Mb)Genes

RP11-81B151150.7Late cornified envelope 5A (LCE5A), 3A(LCE3A), 3B(LCE3B), 3C(LCE3C), 3D(LCE3D), 3E(LCE3E), cysteine-rich C-terminal 1 (CRCT1)
RP11-91G121194.9Complement factor H (CFH). Complement factor H-related 3 (CFHR3)
RP11-118M122241.2Aquaporin 12B (AQP12B), aquaporin 12A (AQP12A), kinesin family member 1A (KIF1A)
RP11-101J1448.1Actin binding LIM protein family, member 2 (ABLIM2)
RP11-23D2370.84ArfGAP with dual PH domains 1 (ADAP1)
RP11-90C3764.3Integrator complex subunit 4-like 1 (INTS4L1)
RP11-35P20771.6tRNA-yW synthesizing protein 1 homolog B (S.cerevisiae) (TYW1B)
RP11-45M1283.9CUB and Sushi multiple domains 1 (CSMD1)
RP11-113B784.2CUB and Sushi multiple domains 1 (CSMD1)
RP11-89I1284.4CUB and Sushi multiple domains 1 (CSMD1)
RP11-79I1983.7CUB and Sushi multiple domains 1 (CSMD1)
RP11-310C139113.5 Chromosome 9 open reading frame 84 (C9orf84)
RP11-79M91077.7Chromosome 10 open reading frame 11 (C10orf11)
RP11-326B41366.8Protocadherin 9 (PCDH9)
RP11-91C171443.2Rho GTPase activating protein 5 (ARHGAP5)
RP11-194H71532.5Golgin A8 family, member A (GOLGA8A)
RP11-152F131580.9Ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 (UBE2Q2P2), golgin A6 family-like 9 (GOLGA6L9), cytoplasmic polyadenylation element binding protein 1, golgin A2 pseudogene (LOC727849), cytoplasmic polyadenylation element binding protein 1(CPEB1)
CTA-526G42220.6Topoisomerase (DNA) III beta (TOP3B)
RP11-90O18763.8Zinc finger protein 107 (ZNF107),zinc finger protein 138 (ZNF138)
RP11-79I1984CUB and Sushi multiple domains 1 (CSMD1)
RP11-90J2188.8 Exoribonuclease 1 (ERI1)
RP11-90M13825.9Early B-cell factor 2 (EBF2)
RP11-91G3891.1Calbindin 1, 28 kDa (CALB1)
RP11-90N71211.4Proline-rich protein BstNI subfamily 4 (PRB4), proline-rich protein BstNI subfamily 1 (PRB1), proline-rich protein BstNI subfamily 2 (PRB2)
RP11-80H141520.5Tubulin, gamma complex-associated protein 5 (TUBGCP5), cytoplasmic FMR1 interacting protein 1 (CYFIP1)
RP11-81H51544.7MicroRNA 548a-3 (MIR548A3)
RP11-90E51598.4ADAM metallopeptidase with thrombospondin type 1 motif, 17 (ADAMTS17)
RP11-89N11876.0 Ribosome binding factor A (putative) (RBFA), ADNP homeobox 2 (ADNP2), hypothetical LOC100130522 (LOC100130522), par-6 partitioning defective 6 homolog gamma (C. elegans) (PARD6G)
RP5-908M142060.4Ribosomal protein S21 (RPS21), Cdk5 and Abl enzyme substrate 2 (CABLES2), chromosome 20 open reading frame 151 (C20orf151)

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