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Journal of Biomedicine and Biotechnology
Volume 2012 (2012), Article ID 797812, 16 pages
http://dx.doi.org/10.1155/2012/797812
Research Article

Inference of Tumor Phylogenies from Genomic Assays on Heterogeneous Samples

1Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA
2Intelligent Oncotherapeutics, Pittsburgh, PA 15243, USA
3Department of Biological Sciences and Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA

Received 2 November 2011; Accepted 21 February 2012

Academic Editor: Ali Khraibi

Copyright © 2012 Ayshwarya Subramanian et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [7 citations]

The following is the list of published articles that have cited the current article.

  • Ayshwarya Subramanian, Stanley Shackney, and Russell Schwartz, “Novel multisample scheme for inferring phylogenetic markers from whole genome tumor profiles.,” IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, vol. 10, no. 6, pp. 1422–31, . View at Publisher · View at Google Scholar
  • Frédéric Thomas, Daniel Fisher, Philippe Fort, Jean-Pierre Marie, Simon Daoust, Benjamin Roche, Christoph Grunau, Céline Cosseau, Guillaume Mitta, Stephen Baghdiguian, François Rousset, Patrice Lassus, Eric Assenat, Damien Grégoire, Dorothée Missé, Alexander Lorz, Frédérique Billy, William Vainchenker, François Delhommeau, Serge Koscielny, Raphael Itzykson, Ruoping Tang, Fanny Fava, Annabelle Ballesta, Thomas Lepoutre, Liliana Krasinska, Vjekoslav Dulic, Peggy Raynaud, Philippe Blache, Corinne Quittau-Prevostel, Emmanuel Vignal, Hélène Trauchessec, Benoit Perthame, Jean Clairambault, Vitali Volpert, Eric Solary, Urszula Hibner, and Michael E. Hochberg, “Applying ecological and evolutionary theory to cancer: a long and winding road,” Evolutionary Applications, vol. 6, no. 1, pp. 1–10, 2012. View at Publisher · View at Google Scholar
  • Salim Akhter Chowdhury, Stanley E. Shackney, Kerstin Heselmeyer-Haddad, Thomas Ried, Alejandro A. Schäffer, and Russell Schwartz, “Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations,” Bioinformatics, vol. 29, no. 13, pp. i189–i198, 2013. View at Publisher · View at Google Scholar
  • F. Strino, F. Parisi, M. Micsinai, and Y. Kluger, “TrAp: a tree approach for fingerprinting subclonal tumor composition,” Nucleic Acids Research, 2013. View at Publisher · View at Google Scholar
  • Salim Akhter Chowdhury, Stanley E. Shackney, Kerstin Heselmeyer-Haddad, Thomas Ried, Alejandro A. Schaeffer, and Russell Schwartz, “Algorithms to Model Single Gene, Single Chromosome, and Whole Genome Copy Number Changes Jointly in Tumor Phylogenetics,” Plos Computational Biology, vol. 10, no. 7, 2014. View at Publisher · View at Google Scholar
  • Paola Bonizzoni, Anna Paola Carrieri, Gianluca Della Vedova, and Gabriella Trucco, “Explaining evolution via constrained persistent perfect phylogeny,” Bmc Genomics, vol. 15, 2014. View at Publisher · View at Google Scholar
  • Russell Schwartz, and Alejandro A. Schäffer, “The evolution of tumour phylogenetics: Principles and practice,” Nature Reviews Genetics, vol. 18, no. 4, pp. 213–229, 2017. View at Publisher · View at Google Scholar