| Summary | Inoculation | Control |
| Clean tags | | | Total number | 4,847,568 | 4,883,691 | Distinct tag number | 446,284 | 423,464 | All tag mapping to genes | | | Total number | 2,974,532 | 2,826,151 | Total % of clean tag | 61.36% | 57.88% | Distinct number | 95,633 | 82,429 | Distinct tag % of clean tag | 21.43% | 18.81% | One tag mapping to unique genes | | | Total number | 639,019 | 610,306 | Distinct number | 72,812 | 64,815 | One tag mapping to multiple genes | | | Total number | 1,996,930 | 1,902,489 | Distinct number | 85,308 | 75,512 | Unknown tags | | | Total number | 1,376,922 | 1,532,237 | Total % of clean tag | 28.40% | 31.37% | Distinct number | 288,186 | 283,137 | Distinct tag % of clean tag | 64.57% | 66.86% |
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