Research Article

Transcriptome Profile Analysis of Sugarcane Responses to Sporisorium scitaminea Infection Using Solexa Sequencing Technology

Table 4

Some selected differentially expressed genes identified using Solexa sequencing in sugarcane.

Gene P ValueFDRAnnotation

gi 10.6 Zea mays STIP1 and U box protein 1
gi 9.2 Sorghum bicolor hypothetical protein
gi 9.0 Saccharum SP-80-3280 chloroplast
gi 8.8 S. bicolor hypothetical protein
gi 8.8 S. bicolor hypothetical protein
gi 8.8 Mus musculus chromosome 1
gi 8.6 S. bicolor hypothetical protein
gi 8.6 S. bicolor ATP synthase complex subunit 9
gi 8.5 Z. ays transcription factor GT-3b
gi 8.5 Z. mays omega-3 fatty acid desaturase
gi 8.4 0.000113S. bicolor hypothetical protein
gi 8.4 0.000113Z.  mays nucleotide adenylyltransferase 1
gi 8.4 0.000113Z. mays clone 294529 ATEB1A mRNA
gi 8.3 0.000214Z. mays dihydrolipoamide S-acetyltransferase 1
gi 8.3 0.000214Z. mays h/ACA ribonucleoprotein mRNA
gi 8.3 0.000214S.  bicolor mitochondrion
gi 8.3 0.000214S. officinarum receptor kinase 1 (BAK1)
gi 8.3 0.000214S. bicolor hypothetical protein
gi 8.2 0.000401S. bicolor hypothetical protein
gi 8.2 0.000401Z. mays myb-like protein mRNA
gi 8.2 0.000402S. bicolor hypothetical protein
gi 8.1 0.000741No match
gi 8.1 0.000741Saccharum NCo 310 chloroplast DNA
gi 8.1 0.000741S. bicolor mitochondrion
gi 8.1 0.000741S. bicolor hypothetical protein
gi 8.1 0.000741S. bicolor hypothetical protein
gi 8.1 0.000741S. bicolor hypothetical protein
gi 8.1 0.000739Z. mays GAPDH mRNA, partial cds
gi 8.1 0.000739No match
gi 8.1 0.000739S. bicolor hypothetical protein
gi 5.8 0.000243S. bicolor hypothetical protein
gi 1.7 NSP-interacting kinase 1
gi 3.3 MKK6-putative MAPKK mRNA
gi 2.2 No match
gi 00Kladothrips maslini 16S ribosomal RNA
gi Manduca sexta actin mRNA, complete cds
gi No match
gi Z. mays subtilisin-chymotrypsin inhibitor,
gi Z. perennis isolate per7a MPI gene
gi S. bicolor hypothetical protein
gi Z. mays subtilisin-chymotrypsin inhibitor
gi 0.000240497S. bicolor hypothetical protein
gi 0.000819694Z. mays clone 261727 mRNA sequence
gi Z. mays subtilisin-chymotrypsin inhibitor
gi No match
gi No match
gi Z. mays adhesive/proline-rich protein
gi S. bicolor hypothetical protein
gi Z. mays xylanase inhibitor protein
gi S. officinarum clone SCQGLR1019F04
gi U-box domain-containing protein 21