Development of Pineapple Microsatellite Markers and Germplasm Genetic Diversity Analysis

Table 4

Frequency and distribution of SSRs in the analysed nonredundant 1110 pineapple ESTs.

Repeats motif	Number of repeat units											Total repeats
	5	6	7	8	9	10	11	12	14	15	>16
A/T	—	—	—	—	—	149	87	67	35	26	100	511
C/G	—	—	—	—	—	5	1	1	2			11
AC/GT	—	8	4	1	1	2	2		1		3	23
AG/CT	—	54	34	40	19	25	19	16	19	14	60	318
AT/AT	—	17	4	9	5	3		1				39
CG/CG	—		1									1
AAC/GTT	—	2	1	1	2		1		1			8
AAG/CTT	—	14	8	7		2	1					33
AAT/ATT	—	3	6	1	2	2						14
ACC/GGT	—	1	2	1		1						5
ACG/CTG	—	6	6	2	2	1	1	1				19
ACT/ATG	—	3	2	1				2				8
AGC/CGT	—	10	6	5	6	2	8					38
AGG/CCT	—	14	8	2								24
AGT/ATC	—		2									2
CCG/CGG	—	3	1		2	1						7
AAAC/GTTT		1										1
AAAG/CTTT	5	2	1									8
AAAT/ATTT	1			1								2
AATC/AGTT	1											1
ACGT/ATGC		1										1
ACTG/ACTG					1							1
AGAT/ATCT	1											1
AGCC/CGGT		1										1
AGCG/CGCT	2											2
AGCT/ATCG	1											1
AGGT/ATCC				4								4
AAAAG/CTTTT	3	1										4
AAAAT/ATTTT	2	1										3
AACAC/GTGTT	1											1
AAGAG/CTCTT	1											1
AATCG/AGCTT	1											1
ACCAT/ATGGT	1											1
AGCCG/CGGCT	1											1
AAAAAG/CTTTTT	3											3
AACCCT/ATTGGG	1											1
AACTAC/ATGTTG	1											1
AAGAGG/CCTTCT		1										1
AAGGAG/CCTCTT	2											2
AAGGCG/CCGCTT	2											2
AATCCC/AGGGTT	1											1
ACGGCG/CCGCTG		1										1
AGCAGG/CCTCGT	1											1
AGCGTC/AGTCGC			1									1