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BioMed Research International
Volume 2013 (2013), Article ID 372646, 7 pages
Research Article

Designing a Bioengine for Detection and Analysis of Base String on an Affected Sequence in High-Concentration Regions

1Department of Computer Science & Engineering, Faculty of Engineering and Technology, NSHM Knowledge Campus, Durgapur 713212, India
2Department of Convergence Security, Sungshin Women's University, 249-1, Dongseon-dong 3-ga, Seoul 136-742, Republic of Korea

Received 4 July 2013; Accepted 13 July 2013

Academic Editor: Sabah Mohammed

Copyright © 2013 Debnath Bhattacharyya et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.


We design an Algorithm for bioengine. As a program are enable optimal alignments searching between two sequences, the host sequence (normal plant) as well as query sequence (virus). Searching for homologues has become a routine operation of biological sequences in 4 × 4 combination with different subsequence (word size). This program takes the advantage of the high degree of homology between such sequences to construct an alignment of the matching regions. There is a main aim which is to detect the overlapping reading frames. This program also enables to find out the highly infected colones selection highest matching region with minimum gap or mismatch zones and unique virus colones matches. This is a small, portable, interactive, front-end program intended to be used to find out the regions of matching between host sequence and query subsequences. All the operations are carried out in fraction of seconds, depending on the required task and on the sequence length.