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BioMed Research International
Volume 2013 (2013), Article ID 397278, 7 pages
Origin and Status of Homologous Proteins of Biomineralization (Biosilicification) in the Taxonomy of Phylogenetic Domains
1Analytical Centre of the Mineralogical and Geochemical Researches, Institute of Geology and Nature Management FEB RAS, 1 Relochny Lane, Blagoveshchensk, Russia
2Department of Oil and Gas Deal, Laboratory of Nanotoxicology, Far Eastern Federal University, 37 Pushkinskaya Street, Vladivostok, Russia
Received 1 March 2013; Revised 16 April 2013; Accepted 3 June 2013
Academic Editor: Vassily Lyubetsky
Copyright © 2013 Igor E. Pamirsky and Kirill S. Golokhvast. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
- H. C. W. Skinner and A. H. Jahren, “Biomineralization,” in Treatise on Geochemistry, pp. 117–184, Elsevier, Amsterdam, The Netherlands, 2003.
- N. P. Yushkin, et al., The Origin of the Biosphere and the Co-Evolution of Mineral and Biological Worlds, Institute of geology, Komi Science Center, Ural Branch RAS, Syktyvkar, Russia, 2007.
- R. M. Hazen, D. Papineau, W. Bleeker et al., “Mineral evolution,” American Mineralogist, vol. 93, no. 11-12, pp. 1693–1720, 2008.
- X. Wang, S. Hu, L. Gan, M. Wiens, and W. E. G. Müller, “Sponges (Porifera) as living metazoan witnesses from the Neoproterozoic: biomineralization and the concept of their evolutionary success,” Terra Nova, vol. 22, no. 1, pp. 1–11, 2010.
- X. Shen, A. M. Belcher, P. K. Hansma, G. D. Stucky, and D. E. Morse, “Molecular cloning and characterization of Lustrin A, a matrix protein from shell and pearl nacre of Haliotis rufescens,” Journal of Biological Chemistry, vol. 272, no. 51, pp. 32472–32481, 1997.
- K. Shimizu, J. Cha, G. D. Stucky, and D. E. Morse, “Silicatein α: cathepsin L-like protein in sponge biosilica,” Proceedings of the National Academy of Sciences of the United States of America, vol. 95, no. 11, pp. 6234–6238, 1998.
- J. N. Cha, K. Shimizu, Y. Zhou et al., “Silicatein filaments and subunits from a marine sponge direct the polymerization of silica and silicones in vitro,” Proceedings of the National Academy of Sciences of the United States of America, vol. 96, no. 2, pp. 361–365, 1999.
- N. Kröger, R. Deutzmann, and M. Sumper, “Polycationic peptides from diatom biosilica that direct silica nanosphere formation,” Science, vol. 286, no. 5442, pp. 1129–1132, 1999.
- N. Kröger, R. Deutzmann, C. Bergsdorf, and M. Sumper, “Species-specific polyamines from diatoms control silica morphology,” Proceedings of the National Academy of Sciences of the United States of America, vol. 97, no. 26, pp. 14133–14138, 2000.
- N. Kröger, R. Deutzmann, and M. Sumper, “Silica-precipitating peptides from diatoms: the chemical structure of silaffin-1A from Cylindrotheca fusiformis,” Journal of Biological Chemistry, vol. 276, no. 28, pp. 26066–26070, 2001.
- N. Kröger, S. Lorenz, E. Brunner, and M. Sumper, “Self-assembly of highly phosphorylated silaffins and their function in biosilica morphogenesis,” Science, vol. 298, no. 5593, pp. 584–586, 2002.
- N. Kröger, “Prescribing diatom morphology: toward genetic engineering of biological nanomaterials,” Current Opinion in Chemical Biology, vol. 11, no. 6, pp. 662–669, 2007.
- W. E. G. Müller, J. Li, H. C. Schröder, L. Qiao, and X. Wang, “The unique skeleton of siliceous sponges (Porifera; Hexactinellida and Demospongiae) that evolved first from the Urmetazoa during the Proterozoic: a review,” Biogeosciences Discussions, vol. 4, no. 1, pp. 385–416, 2007.
- H. C. Schröder, A. Krasko, D. Brandt, et al., “Silicateins, silicase and spicule-associated proteins: synthesis of demosponge silica skeleton and nanobiotechnological applications,” in Porifera Research: Biodiversity, Innovation and Sustainability, pp. 581–592, Museum Nacional, Rio de Janeiro, Brazil, 2007.
- P. Richthammer, M. Börmel, E. Brunner, and K.-H. van Pée, “Biomineralization in diatoms: the role of silacidins,” ChemBioChem, vol. 12, no. 9, pp. 1362–1366, 2011.
- K. S. Golokhvast, I. E. Pamirsky, and A. M. Panichev, “Homology of bacteria proteins, diatoms and sponges participating in biomineralization, and human proteins, and other animals,” Pacific Science Review, vol. 13, no. 1, pp. 39–46, 2011.
- I. E. Pamirsky, E. A. Borodin, and M. A. Shtarberg, Regulation of Proteolysis of Plant and Animal Inhibitors, LAP Lambert Academy Publishing GmbH, Saarbrücken, Germany, 2012.
- I. E. Pamirsky and K. S. Golokhvast, “Bioinformatic study of homology and the evolution of proteins involved in biomineralization,” Informatics and Control Systems, vol. 1, no. 27, pp. 80–86, 2011 (Russian).
- G. A. Danukalova, Paleontology in the Tables. Guidance, GERS Publishing, Tver, Russia, 2009.
- S. M. Porter, “The proterozoic fossil record of heterotrophic eukaryotes,” in Neoproterozoic Geolobiology and Paleobiology, S. Xiao and A. J. Kaufman, Eds., pp. 1–21, Springer, Dordrecht, The Netherlands, 2006.
- 2013, http://paleodb.org/.
- F. Marin, P. Corstjens, B. de Gaulejac, E. de Vrind-De Jong, and P. Westbroek, “Mucins and molluscan calcification: molecular characterization of mucoperlin, a novel mucin-like protein from the nacreous shell layer of the fan mussel Pinna nobilis (Bivalvia, Pteriomorphia),” Journal of Biological Chemistry, vol. 275, no. 27, pp. 20667–20675, 2000.
- R. J. Midura and V. C. Hascall, “Bone sialoprotein—a mucin in disguise?” Glycobiology, vol. 6, no. 7, pp. 677–681, 1996.
- M. P. Kolesnikov, “Form of silicon in plants,” Biological Chemistry Review, vol. 41, pp. 301–332, 2001 (Russian).
- N. E. Samsonova, “The role of silicon in the formation of the phosphate regime of sod-podzolic soils,” Agrochem, vol. 8, pp. 11–18, 2005 (Russian).
- A. M. Panichev, K. S. Golokhvast, A. N. Gulkov, and I. Y. Chekryzhov, “Geophagy and geology of mineral licks (kudurs): a review of russian publications,” Environmental Geochemistry and Health, vol. 35, no. 1, pp. 133–152, 2013.
- R. U. Vysotskyay and N. N. Nemova, Lysosomes and Lysosomal Enzymes of Fish, Nauka, Moscow, Russia, 2008.
- M. A. Fedonkin, “The narrowing of the basis of life and geochemical evkariotizatsiya biosphere: the causal relationship,” Journal of Paleontology, vol. 6, pp. 33–40, 2003 (Russian).
- S. N. Golubev, “Mineral crystals inside the organisms and their role in origin of life,” Zhurnal Obshchei Biologii, vol. 48, pp. 784–806, 1987.
- S. N. Golubev, “Alive crystals,” Nature, vol. 3, pp. 13–21, 1989.
- E. Y. Kostetsky, “The possibility of the formation of protocells and their structural components on the basis of the apatite matrix and cocrystallizing minerals,” Journal of Biological Physics, vol. 31, no. 3-4, pp. 607–638, 2005.
- E. Y. Kostetsky, “How did the life begin?” Achieve Life Sciences, vol. 2, pp. 38–67, 2010 (Russian).
- A. H. Knoll, “Biomineralization and evolutionary history,” Reviews in Mineralogy and Geochemistry, vol. 54, no. 1, pp. 329–356, 2003.
- G. A. Zavarzin, “The formation of biogeochemical cycles,” Journal of Paleontology, vol. 6, pp. 16–24, 2003 (Russian).
- E. B. Naimark, V. A. Erouschev-Shack, N. P. Chizhikova, and E. I. Kompantseva, “Interaction of clay minerals with microorganisms: a review of experimental data,” Zhurnal Obshchei Biologii, vol. 70, no. 2, pp. 155–167, 2009.
- I. S. Barskov, “Biomineralization and evolution. Coevolution of the mineral and biological worlds,” in Biosphere Origin and Evolution, N. Dobretsov, N. Kolchanov, A. Rozanov, and G. Zavarzin, Eds., pp. 211–218, Springer, Berlin, Germany, 2008.