Research Article
Prokaryotic Phylogenies Inferred from Whole-Genome Sequence and Annotation Data
Table 4
The results of accuracy by different stage combinations on fixed datasets.
| | Datasets | 1 | 1 + 2 | 1 + 3 | CGCPhy |
| | Dataset1 | 84.67% | 87.08% | 95.52% | 98.83% | | Dataset2 | 87.01% | 89.58% | 90.58% | 95.29% | | Dataset3 | 91.92% | 86.46% | 96.95% | 98.91% | | Dataset4 | 87.53% | 86.58% | 95.73% | 96.59% | | Dataset5 | 84.96% | 84.96% | 99.29% | 99.29% | | Dataset6 | 78.80% | 78.96% | 95.76% | 98.04% | | Dataset7 | 78.11% | 78.11% | 96.35% | 96.35% | | Dataset8 | 77.48% | 77.48% | 96.00% | 96.00% | | Dataset9 | 80.26% | 86.54% | 92.72% | 93.56% |
| | Mean | 83.41% | 83.97% | 95.43% | 96.98% |
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1: identifying orthologous genes; 2: eliminating the highly conserved orthologous genes; 3: measuring conserved gene cluster distance; CGCPhy = 1 + 2 + 3.
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