BioMed Research International / 2013 / Article / Tab 2

Research Article

On the Difference in Quality between Current Heuristic and Optimal Solutions to the Protein Structure Alignment Problem

Table 2

Average accuracy of the three methods in our study, computed on 60 pairs of proteins that share the same FSSP fold.

NumPairs(3)PSI(3)SI

STRUCTAL
 Original31.480.4710.07
 Near-optimal36.680.549.63
TM-align
 Original35.980.527.60
 Near-optimal39.580.577.76
LOCK2
 Original34.820.5012.56
 Near-optimal42.470.617.25

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