Genetically Distinct Glossina fuscipes fuscipes Populations in the Lake Kyoga Region of Uganda and Its Relevance for Human African Trypanosomiasis
Table 1
Sample sizes and genetic diversity statistics for the mitochondrial CO1 and 15 microsatellite loci in 23 populations of G. f. fuscipes, on samples analyzed for this study (a) and from previous studies (Abila et al., 2008 [24]; Beadell et al., 2010 [25]; and Echodu et al., 2011 [26]).
Population
Code
Date of sampling
Microsatellites
Mitochondrial DNA
No. haplotypes
Hd
Kafu
KF-0
Feb 2010
30
4.500
0.501
0.526
0.065
16
2
0.233
0.00345
KF-10
Jul 2011
4
3.438
0.509
0.525
0.197
2
1
0.000
0.0000
Karuma
KR-0
Feb 2010
40
7.667
0.571
0.652
0.137
12
3
0.439
0.00641
KR-10
Jul 2011
20
6.056
0.604
0.639
0.08
8
3
0.714
0.00664
Putiputi
PT
Oct 2009
26
4.000
0.525
0.564
0.038
22
2
0.247
0.00104
Tororo
TR
Oct 2009
2
1.944
0.472
0.347
−0.03
—
—
—
—
Iganga
IGG
Feb 2011
65
6.000
0.535
0.556
0.033
10
1
0
0
Kisoko
KIS
Feb 2011
8
3.555
0.527
0.542
−0.06
—
—
—
—
Mayuge
MGG
Feb 2011
59
5.600
0.545
0.557
0.027
15
4
0.371
0.00334
Namutumba
NAM
16
5.267
0.553
0.610
0.09
31
4
0.574
0.00517
Nambogo
NB
Jun 2011
17
4.333
0.592
0.584
−0.03
14
2
0.143
0.00272
Sangalo
SA
Dec 2011
15
4.000
0.450
0.496
0.087
15
3
0.257
0.0056
Tuba
TB
Jun 2011
28
5.267
0.579
0.583
0.005
15
2
0.248
0.00105
Aminakwach
AM
Jul 2011
30
4.733
0.537
0.555
0.068
16
2
0.125
0.00056
Bukedea
BKD
May 2011
25
4.429
0.495
0.541
0.098
14
3
0.473
0.00170
Oculoi
OC
Jul 2011
20
4.786
0.639
0.612
−0.015
16
3
0.592
0.0036
Kitgum
KT
Jan 2012
17
5.333
0.55201
0.62790
0.126
10
3
0.600
0.00184
Budaka
BK*
80
4.778
0.509
0.527
0.041
11
1
0.000
0.0000
Bunghazi
BN-0*
Mar 2008
32
4.2
0.529
0.578
0.079
15
3
0.648
0.00538
BN-08+
Mar 2009
40
3.9
0.568
0.609
0.068
BN-12+
Oct 2009
65
4.1
0.549
0.574
0.116
16
4
0.692
0.00466
BN-24
Jun 2011
18
5.348
0.631
0.631
0.06
13
2
0.385
0.00244
Busiime
BU-0*+
Mar 2008
39
3.5
0.476
0.485
0.046
17
1
0.000
0.0000
BU-8+
Mar 2009
40
3.4
0.464
0.477
0.025
BU-12+
Oct 2009
40
3.4
0.464
0.489
0.037
19
1
0.0000
0.0000
Junda
JN-0*+
Mar 2008
40
3.2
0.479
0.489
0.023
19
3
0.444
0.00731
JN-13+
Jan 2010
18
3.1
0.460
0.485
0.065
18
1
0.000
0.00000
JN-24
Jul 2011
3
3.091
0.407
0.333
−0.023
1
Mukongoro
MK-0*+
Mar 2008
40
2.9
0.487
0.460
−0.041
21
2
0.495
0.00093
MK-08+
Mar 2009
24
3.0
0.455
0.431
−0.043
MK-12+
Nov 2009
22
3.1
0.418
0.445
0.068
21
2
0.467
0.00088
Masindi
MS-0*+
Mar 2008
40
3.7
0.568
0.547
−0.025
18
2
0.467
0.001886
MS-13+
Jan 2010
17
4.4
0.562
0.597
0.055
17
2
0.471
0.00964
MS-25
Jul 2011
30
4.722
0.542
0.5533
0.039
15
2
0.419
0.00620
Okame
OK-0*+
Mar 2008
39
3.3
0.452
0.507
0.081
17
3
0.471
0.0094
OK-8+
Mar 2009
40
3.4
0.563
0.546
0.008
—
—
—
—
OK-12+
Oct 2009
39
3.4
0.547
0.552
0.036
18
2
0.294
0.00055
Otuboi
OT-0*+
Jul 2008
53
4.0
0.508
0.535
0.085
20
3
0.426
0.0122
OT-11+
Nov 2009
40
3.7
0.514
0.540
0.076
20
4
0.537
0.00131
: number of individuals analyzed, : allelic richness, : observed heterozygosity, : expected heterozygosity, : Fisher’s inbreeding coefficient; Hd: haplotype diversity, π: nucleotide diversity. Dashes indicate sites from which mtDNA was not collected, *indicates samples used in Beadell et al. (2010) [25], and +indicates samples used in Echodu et al. 2011 [26].