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BioMed Research International
Volume 2013 (2013), Article ID 741476, 7 pages
http://dx.doi.org/10.1155/2013/741476
Research Article

The Short ITS2 Sequence Serves as an Efficient Taxonomic Sequence Tag in Comparison with the Full-Length ITS

1Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100094, China
2College of Resources Science & Technology, Beijing Normal University, Beijing 100875, China

Received 31 October 2012; Accepted 26 December 2012

Academic Editor: Abdurrahman Saydut

Copyright © 2013 Jianping Han et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [34 citations]

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  • Xin-Cun Wang, Chang Liu, Liang Huang, Johan Bengtsson-Palme, Haimei Chen, Jian-Hui Zhang, Dayong Cai, and Jian-Qin Li, “ITS1: a DNA barcode better than ITS2 in eukaryotes?,” Molecular Ecology Resources, 2014. View at Publisher · View at Google Scholar
  • M. Ajmal Ali, Gábor Gyulai, Norbert Hidvégi, Balázs Kerti, Fahad M.A. Al Hemaid, Arun K. Pandey, and Joongku Lee, “The changing epitome of species identification – DNA barcoding,” Saudi Journal of Biological Sciences, 2014. View at Publisher · View at Google Scholar
  • Natascha Techen, Iffat Parveen, and Zhiqiang Pan, “DNA barcoding of medicinal plant material for identification,” Current Opinion in Biotechnology, vol. 25, pp. 103–110, 2014. View at Publisher · View at Google Scholar
  • Shilin Chen, Xiaohui Pang, Jingyuan Song, Linchun Shi, Hui Yao, Jianping Han, and Christine Leon, “A renaissance in herbal medicine identification: From morphology to DNA,” Biotechnology Advances, vol. 32, no. 7, pp. 1237–1244, 2014. View at Publisher · View at Google Scholar
  • Dequan Zhang, Yongshou Yang, Bei Jiang, Lizhen Duan, and Nong Zhou, “How To Correctly Identify Herbal Materials In Market: A Case Study Based On Dna Barcodes,” African Journal Of Traditional Complementary And Alternative Medicines, vol. 11, no. 6, pp. 66–76, 2014. View at Publisher · View at Google Scholar
  • Xiao-Lu Chen, Li Xiang, and Quan-Xi Mei, “Identification of Rubi Parvifolii radix and its adulterants using DNA barcoding,” Chinese Pharmaceutical Journal, vol. 50, no. 17, pp. 1490–1495, 2015. View at Publisher · View at Google Scholar
  • Pei Yang, Hong Zhou, Shuang-Jiao Ma, Wei Sun, Yong-Hua Li, and Hui Yao, “Authentication of raw material for edible and medicinal cinnamon based on plastid Intergenic Region ps-bA-trnH,” Chinese Pharmaceutical Journal, vol. 50, no. 17, pp. 1496–1499, 2015. View at Publisher · View at Google Scholar
  • Baosheng Liao, Xiaochen Chen, Jianping Han, Yang Dan, Lili Wang, Wenjing Jiao, Jingyuan Song, and Shilin Chen, “Identification of commercial Ganoderma (Lingzhi) species by ITS2 sequences,” Chinese Medicine, vol. 10, 2015. View at Publisher · View at Google Scholar
  • Yi-Long Chen, Yue Liu, Chi Song, Yi Zhang, Li Xiang, Gang Fan, and Xian-Rong Lai, “Identification of traditional chinese medicine rubiae radix et and its adulterants using DNA barcodes,” Chinese Pharmaceutical Journal, vol. 50, no. 15, pp. 1266–1272, 2015. View at Publisher · View at Google Scholar
  • Xuejing Jia, Huanxing Su, Jianping Han, Chengwei He, Chao Zhang, Jianfeng Qiu, Lili Wang, Jiaolin Bao, Kai Wang, Yulin Zhang, Meiwan Chen, and Jianbo Wan, “Purification, structural characterization and anticancer activity of the novel polysaccharides from Rhynchosia minima root,” Carbohydrate Polymers, vol. 132, pp. 67–71, 2015. View at Publisher · View at Google Scholar
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  • Priyanka Mishra, Amit Kumar, Akshitha Nagireddy, Daya N. Mani, Ashutosh K. Shukla, Rakesh Tiwari, and Velusamy Sundaresan, “DNA barcoding: an efficient tool to overcome authentication challenges in the herbal market,” Plant Biotechnology Journal, 2015. View at Publisher · View at Google Scholar
  • Giovanna Camara Giudicelli, Geraldo Maeder, and Loreta Brandao de Freitas, “Efficiency of ITS Sequences for DNA Barcoding in Passiflora (Passifloraceae),” International Journal Of Molecular Sciences, vol. 16, no. 4, pp. 7289–7303, 2015. View at Publisher · View at Google Scholar
  • Qing-Jun Yuan, Bin Zhang, Dan Jiang, Wen-Jing Zhang, Tsai-Yun Lin, Nian-He Wang, Shu-Jiau Chiou, and Lu-Qi Huang, “Identification of species and materia medica within Angelica L. (Umbelliferae) based on phylogeny inferred from DNA barcodes,” Molecular Ecology Resources, vol. 15, no. 2, pp. 358–371, 2015. View at Publisher · View at Google Scholar
  • Juan Chen, Jietang Zhao, David L. Erickson, Nianhe Xia, and W. John Kress, “Testing DNA barcodes in closely related species of Curcuma (Zingiberaceae) from Myanmar and China,” Molecular Ecology Resources, vol. 15, no. 2, pp. 337–348, 2015. View at Publisher · View at Google Scholar
  • Davide Ferrigo, Giulio Galla, Eleonora Sforza, Tomas Morosinotto, Gianni Barcaccia, and Cristina Ceschi Berrini, “Biochemical characterization and genetic identity of an oil-rich Acutodesmus obliquus isolate,” Journal Of Applied Phycology, vol. 27, no. 1, pp. 149–161, 2015. View at Publisher · View at Google Scholar
  • Yue Liu, Wei Sun, Chuan Liu, Yaqin Zhang, Yilong Chen, Ming Song, Gang Fan, Xia Liu, Li Xiang, and Yi Zhang, “Identification of Hippophae species (Shaji) through DNA barcodes,” Chinese Medicine, vol. 10, no. 1, 2015. View at Publisher · View at Google Scholar
  • Rodney T. Richardson, Chia-Hua Lin, Douglas B. Sponsler, Juan O. Quijia, Karen Goodell, and Reed M. Johnson, “Application Of Its2 Metabarcoding To Determine The Provenance Of Pollen Collected By Honey Bees In An Agroecosystem,” Applications In Plant Sciences, vol. 3, no. 1, 2015. View at Publisher · View at Google Scholar
  • Lili Wang, Weijun Kong, Meihua Yang, Jianping Han, and Shilin Chen, “Safety issues and new rapid detection methods in traditional Chinese medicinal materials,” Acta Pharmaceutica Sinica B, 2015. View at Publisher · View at Google Scholar
  • Shih-Chieh Lee, Chia-Hsiang Wang, Cheng-En Yen, and Chieh Chang, “DNA barcode and identification of the varieties and provenances of Taiwan's domestic and imported made teas using ribosomal internal transcribed spacer 2 sequences,” Journal of Food and Drug Analysis, 2016. View at Publisher · View at Google Scholar
  • Shangguo Feng, Mengying Jiang, Yujun Shi, Kaili Jiao, Chenjia Shen, Jiangjie Lu, Qicai Ying, and Huizhong Wang, “Application of the Ribosomal DNA ITS2 Region of Physalis (Solanaceae): DNA Barcoding and Phylogenetic Study,” Frontiers in Plant Science, vol. 7, 2016. View at Publisher · View at Google Scholar
  • Wang, Zhi, Xu, Liang, Yang, Shi, and Hou, “Molecular identification of Achyranthis Bidentatae Radix by using DNA barcoding,” Genetics and Molecular Research, vol. 15, no. 2, 2016. View at Publisher · View at Google Scholar
  • Xiaoxue Yu, Zhiyong Xie, Junwei Wu, Junfei Tao, and Xinjun Xu, “DNA Barcoding Identification of Kadsurae Caulis and Spatholobi Caulis Based on Internal Transcribed Spacer 2 Region and Secondary Structure Prediction,” Pharmacognosy Magazine, vol. 12, no. 46, pp. S165–S169, 2016. View at Publisher · View at Google Scholar
  • Juan Liu, Hai-Fei Yan, and Xue-Jun Ge, “The Use of DNA Barcoding on Recently Diverged Species in the Genus Gentiana (Gentianaceae) in China,” Plos One, vol. 11, no. 4, 2016. View at Publisher · View at Google Scholar
  • Xueyong Wang, Guojie Xu, Chunsheng Liu, Luqi Huang, Baosheng Zhao, Xiaolei Ren, Xiaorui Fu, Guangxi Ren, and Siqi Liu, “Development of deft amplification refractory mutation sequencing system (ARMSS) for discriminating Pilos antler based on a short cytochrome b (Cytb) g,” Mitochondrial Dna, vol. 27, no. 2, pp. 1332–1335, 2016. View at Publisher · View at Google Scholar
  • Yang Liu, Xiaoyue Wang, Lili Wang, Xiaochen Chen, Xiaohui Pang, and Jianping Han, “A Nucleotide Signature for the Identification of American Ginseng and Its Products,” Frontiers in Plant Science, vol. 7, 2016. View at Publisher · View at Google Scholar
  • Suhas Kishor Kadam, Shreya Vijaykumar Kotibhaskar, Asif Shabodin Tamboli, Swapnil Mahadeo Patil, Avinash Ramchandra Gholave, Shrirang Ramchandra Yadav, and Sanjay Prabhu Govindwar, “Phylogenetic analysis, genetic diversity and relationships between the recently segregated species of Corynandra and Cleoserrata from the genus Cleome using DNA barcoding and molecular markers,” Comptes Rendus - Biologies, vol. 339, no. 3-4, pp. 123–132, 2016. View at Publisher · View at Google Scholar
  • Priyanka Mishra, Amit Kumar, Vereena Rodrigues, Ashutosh K. Shukla, and Velusamy Sundaresan, “Feasibility of nuclear ribosomal region ITS1 over ITS2 in barcoding taxonomically challenging genera of subtribe Cassiinae (Fabaceae),” PeerJ, vol. 4, pp. e2638, 2016. View at Publisher · View at Google Scholar
  • Xiaoyue Wang, Yang Liu, Lili Wang, Jianping Han, and Shilin Chen, “A Nucleotide Signature for the Identification of Angelicae Sinensis Radix (Danggui) and Its Products,” Scientific Reports, vol. 6, no. 1, 2016. View at Publisher · View at Google Scholar
  • Jianping Han, Xiaohui Pang, Baosheng Liao, Hui Yao, Jingyuan Song, and Shilin Chen, “An authenticity survey of herbal medicines from markets in China using DNA barcoding,” Scientific Reports, vol. 6, 2016. View at Publisher · View at Google Scholar
  • Yat-Tung Lo, and Pang-Chui Shaw, “DNA-based techniques for authentication of processed food and food supplements,” Food Chemistry, 2017. View at Publisher · View at Google Scholar
  • Ning Yu, Yu-long Wei, Xin Zhang, Ning Zhu, Yan-li Wang, Yue Zhu, Hai-ping Zhang, Fen-mei Li, Lan Yang, Jia-qi Sun, and Ai-dong Sun, “Barcode ITS2: a useful tool for identifying Trachelospermum jasminoides and a good monitor for medicine market,” Scientific Reports, vol. 7, no. 1, 2017. View at Publisher · View at Google Scholar
  • Xuejing Jia, Jie Hu, Qingwen Zhang, Muxue He, Peng Li, Jianbo Wan, and Chengwei He, “α-Glucosidase inhibitory activity and structural characterization of polysaccharide fraction from Rhynchosia minima root,” Journal of Functional Foods, vol. 28, pp. 76–82, 2017. View at Publisher · View at Google Scholar