BioMed Research International / 2013 / Article / Tab 4

Review Article

Metabolomics in Plants and Humans: Applications in the Prevention and Diagnosis of Diseases

Table 4

Metabolomic resources.

NameURLInformation/Species

Human metabolome databasehttp://www.hmdb.ca/Chemical and biological data of human metabolites
Golm metabolome databasehttp://gmd.mpimp-golm.mpg.de/GS-MS
Madison metabolomics databasehttp://mmcd.nmrfam.wisc.edu/NMR and MS
Metabolightshttp://www.ebi.ac.uk/metabolights/Metabolite structures, spectra, function/cross-species
Metabolomics at Rothamsted (MeT-RO)http://www.metabolomics.bbsrc.ac.uk/MeT-RO.htmPlant and microbial metabolites
Metlin metabolite databasehttp://metlin.scripps.edu/High resolution MS/MS spectra and tandem MS experiments
PRIMehttp://prime.psc.riken.jp/Genomic and metabolomics data/NMR spectroscopy, GC-MS, LC-MS and CE-MS
Plantmetabolomicshttp://plantmetabolomics.vrac.iastate.edu/ver2/Arabidopsis and other plant species
Metabolome tomato database [79]Metabolites identified by LC-MS
Terpmedhttp://www.terpmed.eu/databases.htmlPlant terpenoids, natural products, secondary metabolites/Therapeutic drugs
Armec repository projecthttp://www.armec.org/MetaboliteLibrary/FIE-MS/HPLC-ESI-MS data/human and plant metabolomes for nutrition
MetaCychttp://metacyc.org/Integration of metabolite data with metabolic pathways/2000 organisms
RiceCychttp://pathway.gramene.org/gramene/ricecyc.shtmlMetabolic pathways, enzymes, metabolites
AraCychttp://www.arabidopsis.org/biocyc/Metabolic pathways, compounds/Arabidopsis
Solanacea Genomics network (SolCyc)http://solgenomics.net/tools/solcyc/index.plPathway genome databases/solanacea species
HumanCychttp://humancyc.org/Metabolic pathways, genome/human
KEGG Pathway databasehttp://www.genome.jp/kegg/pathway.htmlPathways, metabolism, genetic information Cellular processes, human diseases
Mapmanhttp://mapman.gabipd.org/web/guest/mapmanDatasets (e.g., Gene expression data, metabolic pathways)