Research Article
Differentially Methylated Loci Distinguish Ovarian Carcinoma Histological Types: Evaluation of a DNA Methylation Assay in FFPE Tissue
Table 1
Average β-values for CEPH control replicates at 6 housekeeping X-chromosome genes.
| Target CpG (Gene_Probe)a | CpG locus ID | NA10851 replicate 1 | NA10851 replicate 2 | NA10859 replicate 1 | NA10859 replicate 2 | Male | Male | Female | Female |
| EFNB1_E69_F | cg09459058 | 0.0126 | 0.2023 | 0.7337 | 0.6362 | EFNB1_P136_R | cg14717445 | 0 | 0.0464 | 0.7696 | 0.7287 | EFNB1_P17_F | cg22151131 | 0.0347 | 0.4068 | 0.9331 | 0.9314 |
| ELK1_E156_F | cg00983071 | 0 | 0.3000 | 0.6910 | 0.6078 | ELK1_E53_F | cg12482901 | 0 | 0.2093 | 0.8778 | 0.8242 | ELK1_P195_R | cg13072663 | 0.0609 | 0.1694 | 0.8192 | 0.7816 | ELK1_P569_R | cg11111083 | 0.0635 | 0.2362 | 0.8847 | 0.8524 |
| FMR1_P62_R | cg26857803 | 0 | 0 | 0.8810 | 0.8428 |
| G6PD_E190_F | cg10661350 | 0 | 0.0003 | 0.6423 | 0.6107 | G6PD_P1065_R | cg26368202 | 0 | 0 | 0.9371 | 0.9436 | G6PD_P196_F | cg27592930 | 0.0674 | 0.1537 | 0.6010 | 0.6159 | G6PD_P597_F | cg26178557 | 0 | 0.7808 | 0.9157 | 0.9148 |
| GLA_E98_R | cg15481221 | 0.0667 | 0.0802 | 0.7609 | 0.6608 | GLA_P112_F | cg20747453 | 0 | 0 | 0.9764 | 0.9668 | GLA_P343_R | cg24484149 | 0 | 0.0134 | 0.3123 | 0.2510 |
| GPC3_E72_F | cg27496708 | 0 | 0 | 0.6807 | 0.7110 | GPC3_P235_R | cg07504028 | 0.0240 | 0.0475 | 0.8579 | 0.8565 |
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Probe annotation according to the Illumina GoldenGate Cancer Panel I methylation assay; all loci are located within CpG islands.
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