| Pathway | Mutated genes |
| Cell cycle pathway including G1-S phase transition and checkpoints | CCNA1, CCNB1, CCND1, CDK4, CDK6, CDK7, CDKN1B, CDKN2A, CDKN2C, RBL1, CDK4, PRB1, ABL1, ATM, ATR, CDK6, SKP2, TGFB1, TGFB2, TGFB3 |
| TERT pathway | MAX, MYC, SP1, SP3, WT1 |
| p38 MAPK pathway | ATF2, DAXX, GRB2, HMGN1, MAP2K6, MAP3K7, MAP3K9, MAPK14, MAX, MEF2A, MEF2D, MKNK1, MYC, PLA2G4A, RAC1, RIPK1, RPS6KA5, SHC1, TGFB1, TGFB2, TGFB3, TRAF2 |
| Histone methyltransferase | KDM6A, MLL, MLL2, MLL3, NSD1, WHSC1, WHSC1L1 |
| NFKB pathway | BIRC2, BIRC3, BTRC, CARD10, CARD11, CARD6, CARD8, CYLD, FBXW11, IKBIP, IKBKAP, IKBKB, IKBKE, IL1R1, IRAK1, MAP3K14, MAP3K7, MYD88, NFKB2, NFKBIB, NOD2, RELA, RIPK1, RIPK2, RIPK4, TLR4, TRAF2, TRAF3, TRAF3IP1 |
| Clotting pathway | COL4A1, COL4A2, COL4A3, COL4A5, COL4A6, F11, F3, F5, F7, F8, FGA, FGG, TFPI |
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